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(-) Description

Title :  STRUCTURE OF HUMAN RAB1B IN COMPLEX WITH THE BMERB DOMAIN OF MICAL-CL
 
Authors :  A. Rai, A. Oprisko, J. Campos, Y. Fu, T. Friese, R. S. Goody, M. P. Mueller E. M. Gazdag
Date :  14 Aug 16  (Deposition) - 24 Aug 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mical-Cl, Duf3585, Mical, Rab Effector, Rab1B, Protein Transport, Endocytosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Rai, A. Oprisko, J. Campos, Y. Fu, T. Friese, A. Itzen, R. S. Goody, E. M. Gazdag, M. P. Muller
Bmerb Domains Are Bivalent Rab8 Family Effectors Evolved By Gene Duplication.
Elife V. 5 2016
PubMed-ID: 27552051  |  Reference-DOI: 10.7554/ELIFE.18675

(-) Compounds

Molecule 1 - MICAL C-TERMINAL-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MICALCL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ERK2-BINDING TESTICULAR PROTEIN 1,EBITEIN-1
 
Molecule 2 - RAS-RELATED PROTEIN RAB-1B
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RAB1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:17 , GLY B:18 , VAL B:19 , GLY B:20 , LYS B:21 , SER B:22 , CYS B:23 , TYR B:33 , THR B:34 , GLU B:35 , TYR B:37 , SER B:39 , THR B:40 , GLY B:66 , ASN B:121 , LYS B:122 , ASP B:124 , LEU B:125 , SER B:151 , ALA B:152 , LYS B:153 , MG B:302 , HOH B:404 , HOH B:408 , HOH B:410binding site for residue GNP B 301
2AC2SOFTWARESER B:22 , THR B:40 , GNP B:301 , HOH B:404 , HOH B:410binding site for residue MG B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5SZH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5SZH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5SZH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5SZH)

(-) Exons   (0, 0)

(no "Exon" information available for 5SZH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5szh A 531 GHMKQEELKRLYKAQAIQRQLEEVEERQRASEIQGVRLEKALRGEQDEAQLLQEWFKLVLEKNKLMRYESELLIMAQELELEDHQSRLEQKLREKMLKEESQKDEKDLNEEQEVFTELMQVIEQRDKLVDSLEEQRIREKAED 678
                                   540       550       560       570    || 585       595       605       615       625       635       645       655       665       675   
                                                                      575|                                                                                                 
                                                                       581                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..hhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhh..hhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5szh B  -1 GHMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5SZH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5SZH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5SZH)

(-) Gene Ontology  (30, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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  5szh
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  RAB1B_HUMAN | Q9H0U4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MICLK_HUMAN | Q6ZW33: 5szi 5szj 5szk
        RAB1B_HUMAN | Q9H0U4: 3jza 3nkv 4hlq 4i1o 5szk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5SZH)