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(-) Description

Title :  CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM TRAP, P4212 FORM
 
Authors :  G. Song, A. C. Koksal, C. Lu, T. A. Springer
Date :  25 Oct 12  (Deposition) - 26 Dec 12  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Malaria, Parasite Motility, Vwa Domain, Receptor On Sporozoite, Vaccine Target, Sporozoite Surface, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Song, A. C. Koksal, C. Lu, T. A. Springer
Shape Change In The Receptor For Gliding Motility In Plasmodium Sporozoites.
Proc. Natl. Acad. Sci. Usa V. 109 21420 2012
PubMed-ID: 23236185  |  Reference-DOI: 10.1073/PNAS.1218581109

(-) Compounds

Molecule 1 - THROMBOSPONDIN-RELATED ANONYMOUS PROTEIN, TRAP
    Chains: A, B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293T
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: CLOSED VWA DOMAIN (UNP RESIDUES 41-240)
    Gene: TRAP, PF13_0201
    Mutation: YES
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: 3D7

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:98 , THR A:124 , ASN A:125 , TYR A:128 , ARG B:98 , THR B:124 , ASN B:125 , TYR B:128BINDING SITE FOR RESIDUE SO4 A 301

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:43 -A:235
2A:205 -A:212
3B:43 -B:235
4B:205 -B:212

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:126 -Pro A:127
2Leu B:126 -Pro B:127

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HQK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HQK)

(-) Exons   (0, 0)

(no "Exon" information available for 4HQK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeeeeee...eeeee....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh.......eeeeeeee.....hhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhh..........eeeehhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hqk A  41 EVCNDEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVEVEK 240
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240


Chain B from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.....hhhhhhhhhhhhhhhhhh.........eeeeeee...eeeee........hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh.......eeeeeeee.....hhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhh..........eeeehhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hqk B  41 EVCNDEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVEVE 239
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HQK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HQK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HQK)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        Q76NM2_PLAF7 | Q76NM2: 4hqf 4tr9

(-) Related Entries Specified in the PDB File

4hqf 4hql 4hqn 4hqo