4HQL - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF MAGNESIUM-LOADED PLASMODIUM VIVAX TRAP PROTEIN

Authors :   G. Song, A. C. Koksal, C. Lu, T. A. Springer

Date :   25 Oct 12 (Deposition) - 26 Dec 12 (Release) - 09 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.24

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Malaria, Parasite Motility, Vwa Domain, Tsr Domain, Receptor On Sporozoite, Vaccine Target, Sporozoite Surface, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Song, A. C. Koksal, C. Lu, T. A. Springer
Shape Change In The Receptor For Gliding Motility In Plasmodium Sporozoites.
Proc. Natl. Acad. Sci. Usa V. 109 21420 2012
PubMed-ID: 23236185 | Reference-DOI: 10.1073/PNAS.1218581109

Molecule 1 - SPOROZOITE SURFACE PROTEIN 2
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK293T
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Fragment	:	ADHESIVE DOMAINS (UNP RESIDUES 25-283)
	Gene	:	SSP2
	Mutation	:	YES
	Organism Scientific	:	PLASMODIUM VIVAX
	Organism Taxid	:	5855
	Strain	:	SAL I
	Synonym	:	THROMBOSPONDIN REPEAT ANONYMOUS PROTEIN, TRAP

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	BGC	2	Ligand/Ion	BETA-D-GLUCOSE
2	CL	2	Ligand/Ion	CHLORIDE ION
3	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
4	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	BGC	1	Ligand/Ion	BETA-D-GLUCOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	BGC	1	Ligand/Ion	BETA-D-GLUCOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:52 , SER A:54 , THR A:127 , HOH A:401 , HOH A:402 , HOH A:403	BINDING SITE FOR RESIDUE MG A 301
2	AC2	SOFTWARE	THR A:127 , MET A:129 , THR A:130 , ASN A:162 , SER A:163	BINDING SITE FOR RESIDUE CL A 304
3	AC3	SOFTWARE	SER B:52 , SER B:54 , THR B:127 , HOH B:401 , HOH B:402	BINDING SITE FOR RESIDUE MG B 301
4	AC4	SOFTWARE	THR B:127 , MET B:129 , THR B:130 , ASN B:162 , SER B:163 , HOH B:442	BINDING SITE FOR RESIDUE CL B 304
5	AC5	SOFTWARE	VAL A:251 , THR A:252 , HOH A:605 , HOH B:639	BINDING SITE FOR LINKED RESIDUES A 302 to 303
6	AC6	SOFTWARE	ARG A:79 , GLY A:100 , HOH A:532 , ILE B:61 , VAL B:251 , THR B:252 , HOH B:410 , HOH B:417 , HOH B:545 , HOH B:547 , HOH B:564	BINDING SITE FOR LINKED RESIDUES B 302 to 303

Asymmetric Unit

No.	Residues
1	A:39	-	A:231
2	A:201	-	A:208
3	A:240	-	A:269
4	A:249	-	A:277
5	A:253	-	A:282
6	B:39	-	B:231
7	B:201	-	B:208
8	B:240	-	B:269
9	B:249	-	B:277
10	B:253	-	B:282

(no "Cis Peptide Bond" information available for 4HQL)

(no "SAP(SNP)/Variant" information available for 4HQL)

(no "PROSITE Motif" information available for 4HQL)

(no "Exon" information available for 4HQL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeeeeee...eeeee...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.......eeeeeeee.....hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhh..........ee..hhhhhhhhhhhhhh..eeeeeeeee...............eeeeeee..........eeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hql A  30 DEVKYSEEVCNEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTEVERVANCGPWDPWTACSVTCGRGTHSRSRPSLHEKCTTHMVSECEEGECP 283
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279

Chain B from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeee...eeeee...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.......eeeeeeee.....hhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhh..........ee..hhhhhhhhhhhhhh.eeeeeeeeee...............eeeeeee..........eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hql B  28 VVDEVKYSEEVCNEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTEVERVANCGPWDPWTACSVTCGRGTHSRSRPSLHEKCTTHMVSECEEGECP 283
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4HQL)

(no "CATH Domain" information available for 4HQL)

(no "Pfam Domain" information available for 4HQL)

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4hql)

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (4, 8)

Sites (6, 6)

SS Bonds (10, 10)

Cis Peptide Bonds (0, 0)

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