4HQO - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PLASMODIUM VIVAX TRAP PROTEIN

Authors :   G. Song, A. C. Koksal, C. Lu, T. A. Springer

Date :   25 Oct 12 (Deposition) - 26 Dec 12 (Release) - 09 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.19

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Malaria, Gliding Motility, Vwa Domain, Tsr Domain, Extensible Beta- Ribbon, Receptor On Sporozoite, Vaccine Target, Sporozoite Surface, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Song, A. C. Koksal, C. Lu, T. A. Springer
Shape Change In The Receptor For Gliding Motility In Plasmodium Sporozoites.
Proc. Natl. Acad. Sci. Usa V. 109 21420 2012
PubMed-ID: 23236185 | Reference-DOI: 10.1073/PNAS.1218581109

Molecule 1 - SPOROZOITE SURFACE PROTEIN 2
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK293T
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Fragment	:	ADHESIVE DOMAINS (UNP RESIDUES 25-283)
	Gene	:	SSP2
	Mutation	:	YES
	Organism Scientific	:	PLASMODIUM VIVAX
	Organism Taxid	:	5855
	Strain	:	SAL I
	Synonym	:	THROMBOSPONDIN REPEAT ANONYMOUS PROTEIN, TRAP

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 8)

No.	Name	Count	Type	Full Name
1	BGC	2	Ligand/Ion	BETA-D-GLUCOSE
2	CL	2	Ligand/Ion	CHLORIDE ION
3	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
4	MG	1	Ligand/Ion	MAGNESIUM ION
5	NA	1	Ligand/Ion	SODIUM ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	BGC	1	Ligand/Ion	BETA-D-GLUCOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	BGC	1	Ligand/Ion	BETA-D-GLUCOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:52 , SER A:54 , THR A:127 , HOH A:401 , HOH A:408 , HOH A:523	BINDING SITE FOR RESIDUE MG A 301
2	AC2	SOFTWARE	THR A:127 , MET A:129 , THR A:130 , ASN A:162 , SER A:163	BINDING SITE FOR RESIDUE CL A 304
3	AC3	SOFTWARE	TYR A:85 , GLU A:95 , GLU A:135	BINDING SITE FOR RESIDUE NA A 305
4	AC4	SOFTWARE	THR B:127 , MET B:129 , THR B:130 , ASN B:162 , SER B:163	BINDING SITE FOR RESIDUE CL B 303
5	AC5	SOFTWARE	LYS A:164 , TYR A:165 , LEU A:168 , VAL A:251 , THR A:252 , CYS A:253 , HOH A:473 , HOH A:527 , HOH A:592 , HOH A:708 , MET B:273 , VAL B:274 , HOH B:438 , HOH B:693	BINDING SITE FOR LINKED RESIDUES A 302 to 303
6	AC6	SOFTWARE	ARG A:79 , GLY A:100 , PRO B:58 , ASN B:59 , THR B:62 , LYS B:63 , GLN B:188 , THR B:252 , HOH B:404 , HOH B:414 , HOH B:434 , HOH B:527	BINDING SITE FOR LINKED RESIDUES B 301 to 302

Asymmetric Unit

No.	Residues
1	A:39	-	A:231
2	A:201	-	A:208
3	A:240	-	A:269
4	A:249	-	A:277
5	A:253	-	A:282
6	B:39	-	B:231
7	B:201	-	B:208
8	B:240	-	B:269
9	B:249	-	B:277
10	B:253	-	B:282

(no "Cis Peptide Bond" information available for 4HQO)

(no "SAP(SNP)/Variant" information available for 4HQO)

(no "PROSITE Motif" information available for 4HQO)

(no "Exon" information available for 4HQO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeeeeee...eeeee...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.......eeeeeeee.....hhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhh..........ee..hhhhhhhhhhhhhh..eeeeeeeee..............eeeeeeee..........eeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hqo A  30 DEVKYSEEVCNEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTEVERVANCGPWDPWTACSVTCGRGTHSRSRPSLHEKCTTHMVSECEEGECPHHH 286
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279

Chain B from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhh......eeeeeeee...eeeee...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.......eeeeeeee.....hhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhh..........ee..hhhhhhhhhhhhhh.eeeeeeeeee...............eeeeeee..........eeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hqo B  25 DEKVVDEVKYSEEVCNEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTEVERVANCGPWDPWTACSVTCGRGTHSRSRPSLHEKCTTHMVSECEEGECPH 284
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4HQO)

(no "CATH Domain" information available for 4HQO)

(no "Pfam Domain" information available for 4HQO)

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		Biological Unit 2	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (5, 8)

Sites (6, 6)

SS Bonds (10, 10)

Cis Peptide Bonds (0, 0)

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