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(-) Description

Title :  INVARIOM REFINEMENT OF A NEW DIMERIC MONOCLINIC 2 SOLVATE OF THIOSTREPTON AT 0.64 ANGSTROM RESOLUTION
 
Authors :  K. Proepper, J. J. Holstein, C. B. Huebschle, C. S. Bond, B. Dittrich
Date :  23 Oct 12  (Deposition) - 02 Oct 13  (Release) - 02 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.64
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Antibiotic, Thiopeptide, Antibacterial, Thiazole, Thiazoline, Oxazole, Ribosome, Translation Inhibition (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Propper, J. J. Holstein, C. B. Hubschle, C. S. Bond, B. Dittrich
Invariom Refinement Of A New Monoclinic Solvate Of Thiostrepton At 0. 64 Angstrom Resolution.
Acta Crystallogr. , Sect. D V. 69 1530 2013
PubMed-ID: 23897476  |  Reference-DOI: 10.1107/S0907444913010664

(-) Compounds

Molecule 1 - THIOSTREPTON
    Chains: A, B
    Fragment: UNP RESIDUES 56-72
    Organism Scientific: STREPTOMYCES AZUREUS
    Organism Taxid: 146537
    Strain: MST-AS4632
    Synonym: ALANINAMIDE, BRYAMYCIN, GARGON, THIACTIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (10, 40)

Asymmetric/Biological Unit (10, 40)
No.NameCountTypeFull Name
1BB98Mod. Amino Acid(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
2DBU2Mod. Amino Acid(2Z)-2-AMINOBUT-2-ENOIC ACID
3DCY2Mod. Amino AcidD-CYSTEINE
4DHA6Mod. Amino Acid2-AMINO-ACRYLIC ACID
5DMF8Ligand/IonDIMETHYLFORMAMIDE
6ETZ6Ligand/IonDIETHYL ETHER
7MH62Mod. Amino Acid3-HYDROXY-2-IMINOPROPANOIC ACID
8NH22Mod. Amino AcidAMINO GROUP
9QUA2Mod. Amino Acid8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID
10TS92Mod. Amino Acid(2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLPENTANOIC ACID

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:2 , ALA A:3 , DHA A:4 , ALA A:5 , SER A:6 , BB9 A:7 , THR A:8 , TS9 A:11 , THR A:13 , BB9 A:14 , HOH A:201 , QUA B:1 , BB9 B:7BINDING SITE FOR RESIDUE QUA A 1
02AC2SOFTWAREDHA A:18 , ETZ A:103 , ETZ A:104 , ETZ A:107 , ETZ B:106BINDING SITE FOR RESIDUE NH2 A 19
03AC3SOFTWAREQUA A:1 , BB9 A:7 , HOH A:202 , ILE B:2 , ALA B:3 , DHA B:4 , ALA B:5 , SER B:6 , BB9 B:7 , THR B:8 , TS9 B:11 , THR B:13 , BB9 B:14BINDING SITE FOR RESIDUE QUA B 1
04AC4SOFTWAREDMF A:102 , ETZ A:103 , DCY B:10 , BB9 B:12 , DHA B:18 , DMF B:104 , ETZ B:106BINDING SITE FOR RESIDUE NH2 B 19
05AC5SOFTWAREALA A:3 , DHA A:4 , ALA B:3 , DHA B:4BINDING SITE FOR RESIDUE DMF A 101
06AC6SOFTWAREALA A:5 , SER A:6 , BB9 A:12 , THR A:13 , BB9 A:14 , BB9 A:16 , DHA A:18 , ETZ A:106 , DCY B:10 , DHA B:18 , NH2 B:19 , DMF B:105 , ETZ B:106BINDING SITE FOR RESIDUE DMF A 102
07AC7SOFTWARENH2 A:19 , ETZ A:107 , DCY B:10 , BB9 B:12 , BB9 B:14 , DHA B:18 , NH2 B:19 , ETZ B:106BINDING SITE FOR RESIDUE ETZ A 103
08AC8SOFTWARETHR A:8 , BB9 A:12 , BB9 A:14 , DHA A:18 , NH2 A:19 , ETZ A:107 , ETZ B:106BINDING SITE FOR RESIDUE ETZ A 104
09AC9SOFTWAREALA A:5 , BB9 A:16BINDING SITE FOR RESIDUE ETZ A 105
10BC1SOFTWAREBB9 A:12 , DMF A:102 , DMF B:103 , DMF B:105BINDING SITE FOR RESIDUE ETZ A 106
11BC2SOFTWAREDBU A:9 , DCY A:10 , DHA A:18 , NH2 A:19 , ETZ A:103 , ETZ A:104 , DMF A:108 , DHA B:18BINDING SITE FOR RESIDUE ETZ A 107
12BC3SOFTWAREDHA A:18 , ETZ A:107 , DHA B:18 , DMF B:101BINDING SITE FOR RESIDUE DMF A 108
13BC4SOFTWAREDMF A:108 , DHA B:17 , DHA B:18 , DMF B:102 , DMF B:104BINDING SITE FOR RESIDUE DMF B 101
14BC5SOFTWAREDHA A:17 , ALA B:5 , DHA B:17 , DHA B:18 , DMF B:101 , DMF B:104BINDING SITE FOR RESIDUE DMF B 102
15BC6SOFTWAREBB9 A:16 , ETZ A:106 , SER B:6 , BB9 B:14 , DMF B:105BINDING SITE FOR RESIDUE DMF B 103
16BC7SOFTWAREDCY B:10 , DHA B:17 , DHA B:18 , NH2 B:19 , DMF B:101 , DMF B:102BINDING SITE FOR RESIDUE DMF B 104
17BC8SOFTWAREBB9 A:12 , BB9 A:16 , DMF A:102 , ETZ A:106 , BB9 B:14 , MH6 B:15 , DMF B:103BINDING SITE FOR RESIDUE DMF B 105
18BC9SOFTWARENH2 A:19 , DMF A:102 , ETZ A:103 , ETZ A:104 , THR B:8 , DBU B:9 , DCY B:10 , BB9 B:12 , NH2 B:19BINDING SITE FOR RESIDUE ETZ B 106
19CC1SOFTWAREQUA A:1 , NH2 A:19 , DMF A:101 , DMF A:102 , ETZ A:104 , ETZ A:105 , ETZ A:106 , ETZ A:107 , DMF A:108 , HOH A:201 , HOH A:202 , QUA B:1 , ILE B:2 , ALA B:3 , TS9 B:11 , BB9 B:12 , THR B:13 , MH6 B:15 , BB9 B:16 , DHA B:17 , DHA B:18 , NH2 B:19 , DMF B:102 , DMF B:103 , DMF B:105BINDING SITE FOR CHAIN A OF THIOSTREPTON
20CC2SOFTWAREQUA A:1 , ILE A:2 , TS9 A:11 , BB9 A:12 , THR A:13 , MH6 A:15 , BB9 A:16 , DHA A:17 , DHA A:18 , NH2 A:19 , DMF A:101 , DMF A:102 , ETZ A:103 , ETZ A:107 , DMF A:108 , HOH A:201 , HOH A:202 , QUA B:1 , NH2 B:19 , DMF B:101 , DMF B:102 , DMF B:103 , DMF B:104 , DMF B:105 , ETZ B:106BINDING SITE FOR CHAIN B OF THIOSTREPTON

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HP2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HP2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HP2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HP2)

(-) Exons   (0, 0)

(no "Exon" information available for 4HP2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:19
                                                  
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ................... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  4hp2 A  1 xIAsAScTtxicTcscssx 19
                            |  |  | 10|| ||||||
                            |  |  | |||| 15-MH6
                            1-QUA | |||| |16-BB9
                               4-DHA|||| | 17-DHA
                                  7-BB9| |  18-DHA
                                    9-DBU|   19-NH2
                                    10-DCY     
                                     11-TS9    
                                      12-BB9   
                                        14-BB9 


Chain B from PDB  Type:PROTEIN  Length:19
                                                  
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ................... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  4hp2 B  1 xIAsAScTtxicTcscssx 19
                            |  |  | 10|| ||||||
                            |  |  | |||| 15-MH6
                            1-QUA | |||| |16-BB9
                               4-DHA|||| | 17-DHA
                                  7-BB9| |  18-DHA
                                    9-DBU|   19-NH2
                                    10-DCY     
                                     11-TS9    
                                      12-BB9   
                                        14-BB9
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HP2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HP2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HP2)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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        THCL_STRAJ | P0C8P8: 1e9w 1oln 2jq7 2l2w 2l2x 2l2y 2l2z 3cf5

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