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(-) Description

Title :  STRUCTURE OF THE MACROCYCLE THIOSTREPTON SOLVED USING THE ANOMALOUS DISPERSIVE CONTRIBUTION FROM SULFUR
 
Authors :  C. S. Bond, M. P. Shaw, M. S. Alphey, W. N. Hunter
Date :  27 Oct 00  (Deposition) - 23 Mar 01  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.02
Chains :  Asym./Biol. Unit :  A
Keywords :  Antibiotic, Thiopeptide, Antibacterial, Thiazole, Thiazoline, Oxazole, Ribosome, Translation Inhibition (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. S. Bond, M. P. Shaw, M. S. Alphey, W. N. Hunter
Structure Of The Macrocycle Thiostrepton Solved Using The Anomalous Dispersive Contribution From Sulfur
Acta Crystallogr. , Sect. D V. 57 755 2001
PubMed-ID: 11320328  |  Reference-DOI: 10.1107/S0907444901003134

(-) Compounds

Molecule 1 - THIOSTREPTON
    ChainsA
    Organism ScientificSTREPTOMYCES AZUREUS
    Organism Taxid146537
    Other DetailsCALBIOCHEM
    SynonymALANINAMIDE, BRYAMYCIN, THIACTIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 13)

Asymmetric/Biological Unit (8, 13)
No.NameCountTypeFull Name
1BB94Mod. Amino Acid(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
2DBU1Mod. Amino Acid(2E)-2-AMINOBUT-2-ENOIC ACID
3DCY1Mod. Amino AcidD-CYSTEINE
4DHA3Mod. Amino Acid2-AMINO-ACRYLIC ACID
5MH61Mod. Amino Acid3-HYDROXY-2-IMINOPROPANOIC ACID
6NH21Mod. Amino AcidAMINO GROUP
7QUA1Mod. Amino Acid8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID
8TS91Mod. Amino Acid(2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLPENTANOIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:1 , ALA A:2 , DHA A:3 , ALA A:4 , SER A:5 , BB9 A:6 , THR A:7 , TS9 A:10 , BB9 A:11 , THR A:12 , BB9 A:13 , NH2 A:18 , HOH A:2004BINDING SITE FOR RESIDUE QUA A 0
2AC2SOFTWAREQUA A:0 , BB9 A:6 , DHA A:17BINDING SITE FOR RESIDUE NH2 A 18
3AC3SOFTWAREQUA A:0 , NH2 A:18 , HOH A:2001 , HOH A:2002 , HOH A:2003 , HOH A:2004BINDING SITE FOR CHAIN A OF THIOSTREPTON

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1E9W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1E9W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:19
 aligned with THCL_STRAJ | P0C8P8 from UniProtKB/Swiss-Prot  Length:72

    Alignment length:19
                                            72 
                                    64       | 
            THCL_STRAJ   55 MIASASCTTCICTCSCSS-  -
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ................... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  1e9w A  0 xIAsAScTtxicTcscssx 18
                            |  |  | |9|| ||||||
                            |  |  | |||| 14-MH6
                            0-QUA | |||| |15-BB9
                               3-DHA|||| | 16-DHA
                                  6-BB9| |  17-DHA
                                    8-DBU|   18-NH2
                                     9-DCY     
                                     10-TS9    
                                      11-BB9   
                                        13-BB9 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1E9W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1E9W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1E9W)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (THCL_STRAJ | P0C8P8)
biological process
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THCL_STRAJ | P0C8P81oln 2jq7 2l2w 2l2x 2l2y 2l2z 3cf5 4hp2

(-) Related Entries Specified in the PDB File

1d8t CRYSTAL STRUCTURE OF THE ELONGATION FACTOR EF-TU-MGGDP COMPLEXED WITH THE THIOPEPTIDE GE2270A.
1oln SOLUTION STRUCTURE OF THIOPEPTIDE THIOSTREPTON BINDING TO L11 SUBSTRATE FROM 50S RIBOSOMAL RNA
2c77 CRYSTAL STRUCTURE OF THE ELONGATION FACTOR EF-TU-GNP COMPLEXED WITH THIOPEPTIDE GE2270A.
2jq7 SOLUTION STRUCTURE OF THE COMPLEX OF THE THIOPEPTIDE THIOSTREPTON AND RIBOSOMAL L11-RNA
2zjp CRYSTAL STRUCTURE OF NOSIHEPTIDE COMPLEXED WITH THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
3cf5 CRYSTAL STRUCTURE OF RIBOSOMAL L11-RNA COMPLEXED WITH THE THIOPEPTIDE THIOSTREPTON