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(-) Description

Title :  CRYSTAL STRUCTURE OF LEUT-E290S WITH BOUND BR
 
Authors :  A. K. Kantcheva, M. Quick, L. Shi, A. M. L. Winther, S. Stolzenberg, H. We J. A. Javitch, P. Nissen
Date :  18 Oct 12  (Deposition) - 08 May 13  (Release) - 08 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Membrane Transporter, Leucine Transporter, Leucine, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Kantcheva, M. Quick, L. Shi, A. M. L. Winther, S. Stolzenberg, H. Weinstein, J. A. Javitch, P. Nissen
The Chloride Binding Site Of Neurotransmitter Sodium Symporters
Proc. Natl. Acad. Sci. Usa 2013
PubMed: search

(-) Compounds

Molecule 1 - TRANSPORTER
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: C41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SNF, AQ_2077
    Mutation: YES
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 224324
    Strain: VF5
    Synonym: LEUCINE TRANSPORTER

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 26)

Asymmetric Unit (4, 26)
No.NameCountTypeFull Name
1BOG9Ligand/IonB-OCTYLGLUCOSIDE
2BR11Ligand/IonBROMIDE ION
3LEU2Mod. Amino AcidLEUCINE
4NA4Ligand/IonSODIUM ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1BOG5Ligand/IonB-OCTYLGLUCOSIDE
2BR-1Ligand/IonBROMIDE ION
3LEU1Mod. Amino AcidLEUCINE
4NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1BOG4Ligand/IonB-OCTYLGLUCOSIDE
2BR-1Ligand/IonBROMIDE ION
3LEU1Mod. Amino AcidLEUCINE
4NA-1Ligand/IonSODIUM ION
Biological Unit 3 (2, 11)
No.NameCountTypeFull Name
1BOG9Ligand/IonB-OCTYLGLUCOSIDE
2BR-1Ligand/IonBROMIDE ION
3LEU2Mod. Amino AcidLEUCINE
4NA-1Ligand/IonSODIUM ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:22 , GLY A:24 , LEU A:25 , GLY A:26 , VAL A:104 , TYR A:108 , PHE A:253 , THR A:254 , SER A:256 , PHE A:259 , SER A:355 , ILE A:359 , NA A:603BINDING SITE FOR RESIDUE LEU A 601
02AC2SOFTWAREGLY A:20 , VAL A:23 , ALA A:351 , THR A:354 , SER A:355BINDING SITE FOR RESIDUE NA A 602
03AC3SOFTWAREALA A:22 , VAL A:23 , GLY A:24 , ASN A:27 , THR A:254 , ASN A:286 , LEU A:601BINDING SITE FOR RESIDUE NA A 603
04AC4SOFTWAREPHE A:31 , TYR A:47 , GLN A:250 , THR A:254 , SER A:290BINDING SITE FOR RESIDUE BR A 604
05AC5SOFTWARESER A:165BINDING SITE FOR RESIDUE BR A 605
06AC6SOFTWAREPHE A:167BINDING SITE FOR RESIDUE BOG A 606
07AC7SOFTWAREPRO A:164 , LEU A:166 , HIS A:391 , BOG A:608BINDING SITE FOR RESIDUE BOG A 607
08AC8SOFTWARELYS A:163 , LEU A:392 , BOG A:607 , HOH A:707 , TRP B:484 , PHE B:488 , BOG B:601BINDING SITE FOR RESIDUE BOG A 608
09AC9SOFTWARELEU A:371 , LYS A:372 , LEU A:373 , LEU A:503 , ARG A:506 , ARG A:507 , LEU B:371 , LYS B:372 , LEU B:373 , LEU B:503 , ARG B:507 , HIS B:510 , BR B:611BINDING SITE FOR RESIDUE BOG A 609
10BC1SOFTWAREHIS A:74 , PRO A:78 , ALA A:79 , TYR A:82 , LEU A:83 , ARG A:86 , LYS A:91 , PHE A:366 , GLU A:370 , VAL A:501 , ALA A:504 , ARG A:507 , ARG A:508BINDING SITE FOR RESIDUE BOG A 610
11BC2SOFTWAREARG A:30 , GLN A:34BINDING SITE FOR RESIDUE BR A 611
12BC3SOFTWARETRP A:481BINDING SITE FOR RESIDUE BR A 612
13BC4SOFTWARETHR A:338 , THR B:338BINDING SITE FOR RESIDUE BR A 613
14BC5SOFTWARESER A:374 , HIS A:377BINDING SITE FOR RESIDUE BR A 614
15BC6SOFTWAREILE A:161 , PHE A:395 , LEU A:396 , BOG A:608 , HOH A:707 , MET B:476 , GLU B:477 , THR B:479 , HIS B:480 , VAL B:483 , TRP B:484 , ILE B:485 , ARG B:487BINDING SITE FOR RESIDUE BOG B 601
16BC7SOFTWAREGLY A:492 , LEU A:495 , PHE A:496 , ILE B:385 , LEU B:493 , LEU B:495 , PHE B:496BINDING SITE FOR RESIDUE BOG B 602
17BC8SOFTWAREASN B:21 , ALA B:22 , GLY B:24 , LEU B:25 , GLY B:26 , TYR B:108 , PHE B:253 , THR B:254 , SER B:256 , PHE B:259 , SER B:355 , ILE B:359 , NA B:605BINDING SITE FOR RESIDUE LEU B 603
18BC9SOFTWAREGLY B:20 , VAL B:23 , ALA B:351 , THR B:354 , SER B:355BINDING SITE FOR RESIDUE NA B 604
19CC1SOFTWAREALA B:22 , VAL B:23 , GLY B:24 , ASN B:27 , THR B:254 , ASN B:286 , LEU B:603BINDING SITE FOR RESIDUE NA B 605
20CC2SOFTWAREPHE B:31 , TYR B:47 , GLN B:250 , THR B:254 , SER B:290BINDING SITE FOR RESIDUE BR B 606
21CC3SOFTWARESER B:165BINDING SITE FOR RESIDUE BR B 607
22CC4SOFTWAREPRO B:164 , SER B:165 , LEU B:166 , PHE B:388 , HIS B:391 , BOG B:609BINDING SITE FOR RESIDUE BOG B 608
23CC5SOFTWARETRP A:484 , LYS B:163 , LEU B:392 , PHE B:395 , BOG B:608BINDING SITE FOR RESIDUE BOG B 609
24CC6SOFTWAREARG B:30 , GLN B:34 , ALA B:319BINDING SITE FOR RESIDUE BR B 610
25CC7SOFTWAREBOG A:609 , SER B:374 , HIS B:377BINDING SITE FOR RESIDUE BR B 611

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HMK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HMK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HMK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HMK)

(-) Exons   (0, 0)

(no "Exon" information available for 4HMK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:502
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4hmka_ A: Na(+):neurotransmitter symporter homologue LeuT                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.ee..eehhhhhhhhh........hhhhhhhhhhhhhhhhh...hhhhhhhh.......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hmk A   4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPTDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKASVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYEETHWTVWITRFYIIGLFLFLTFLVFLAERRRNHESL 601
                                    13        23        33        43        53        63        73        83        93       103       113       123       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466    || 481       491       501       511||
                                                                                                                                                         131|                                                                                                                                                                                                                                                                                                                                             471|                                512|
                                                                                                                                                          135                                                                                                                                                                                                                                                                                                                                              477                                 601


Chain B from PDB  Type:PROTEIN  Length:506
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4hmkb_ B: Na(+):neurotransmitter symporter homologue LeuT                                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.ee..eehhhhhhhhh........hhhhhhhhhhhhhhhhh...hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hmk B   4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPTDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKASVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRNHES 512
                                    13        23        33        43        53        63        73        83        93       103       113       123       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506      
                                                                                                                                                         131|                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                          135
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HMK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HMK)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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  4hmk
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  O67854_AQUAE | O67854
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O67854_AQUAE | O67854: 2a65 2q6h 2q72 2qb4 2qei 2qju 3f3a 3f3c 3f3d 3f3e 3f48 3f4i 3f4j 3gjc 3gjd 3gwu 3gwv 3gww 3mpn 3mpq 3qs4 3qs5 3qs6 3tt1 3tt3 3tu0 3usg 3usi 3usj 3usk 3usl 3usm 3uso 3usp 4fxz 4fy0 4hod 4mm4 4mm5 4mm6 4mm7 4mm8 4mm9 4mma 4mmb 4mmc 4mmd 4mme 4mmf 5jae 5jaf 5jag

(-) Related Entries Specified in the PDB File

4hod