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4HMK
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (86 KB)
Biol.Unit 3 (168 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LEUT-E290S WITH BOUND BR
Authors
:
A. K. Kantcheva, M. Quick, L. Shi, A. M. L. Winther, S. Stolzenberg, H. We J. A. Javitch, P. Nissen
Date
:
18 Oct 12 (Deposition) - 08 May 13 (Release) - 08 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Membrane Transporter, Leucine Transporter, Leucine, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Kantcheva, M. Quick, L. Shi, A. M. L. Winther, S. Stolzenberg, H. Weinstein, J. A. Javitch, P. Nissen
The Chloride Binding Site Of Neurotransmitter Sodium Symporters
Proc. Natl. Acad. Sci. Usa 2013
[
close entry info
]
Hetero Components
(4, 26)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
1e: B-OCTYLGLUCOSIDE (BOGe)
1f: B-OCTYLGLUCOSIDE (BOGf)
1g: B-OCTYLGLUCOSIDE (BOGg)
1h: B-OCTYLGLUCOSIDE (BOGh)
1i: B-OCTYLGLUCOSIDE (BOGi)
2a: BROMIDE ION (BRa)
2b: BROMIDE ION (BRb)
2c: BROMIDE ION (BRc)
2d: BROMIDE ION (BRd)
2e: BROMIDE ION (BRe)
2f: BROMIDE ION (BRf)
2g: BROMIDE ION (BRg)
2h: BROMIDE ION (BRh)
2i: BROMIDE ION (BRi)
2j: BROMIDE ION (BRj)
2k: BROMIDE ION (BRk)
3a: LEUCINE (LEUa)
3b: LEUCINE (LEUb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
9
Ligand/Ion
B-OCTYLGLUCOSIDE
2
BR
11
Ligand/Ion
BROMIDE ION
3
LEU
2
Mod. Amino Acid
LEUCINE
4
NA
4
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:22 , GLY A:24 , LEU A:25 , GLY A:26 , VAL A:104 , TYR A:108 , PHE A:253 , THR A:254 , SER A:256 , PHE A:259 , SER A:355 , ILE A:359 , NA A:603
BINDING SITE FOR RESIDUE LEU A 601
02
AC2
SOFTWARE
GLY A:20 , VAL A:23 , ALA A:351 , THR A:354 , SER A:355
BINDING SITE FOR RESIDUE NA A 602
03
AC3
SOFTWARE
ALA A:22 , VAL A:23 , GLY A:24 , ASN A:27 , THR A:254 , ASN A:286 , LEU A:601
BINDING SITE FOR RESIDUE NA A 603
04
AC4
SOFTWARE
PHE A:31 , TYR A:47 , GLN A:250 , THR A:254 , SER A:290
BINDING SITE FOR RESIDUE BR A 604
05
AC5
SOFTWARE
SER A:165
BINDING SITE FOR RESIDUE BR A 605
06
AC6
SOFTWARE
PHE A:167
BINDING SITE FOR RESIDUE BOG A 606
07
AC7
SOFTWARE
PRO A:164 , LEU A:166 , HIS A:391 , BOG A:608
BINDING SITE FOR RESIDUE BOG A 607
08
AC8
SOFTWARE
LYS A:163 , LEU A:392 , BOG A:607 , HOH A:707 , TRP B:484 , PHE B:488 , BOG B:601
BINDING SITE FOR RESIDUE BOG A 608
09
AC9
SOFTWARE
LEU A:371 , LYS A:372 , LEU A:373 , LEU A:503 , ARG A:506 , ARG A:507 , LEU B:371 , LYS B:372 , LEU B:373 , LEU B:503 , ARG B:507 , HIS B:510 , BR B:611
BINDING SITE FOR RESIDUE BOG A 609
10
BC1
SOFTWARE
HIS A:74 , PRO A:78 , ALA A:79 , TYR A:82 , LEU A:83 , ARG A:86 , LYS A:91 , PHE A:366 , GLU A:370 , VAL A:501 , ALA A:504 , ARG A:507 , ARG A:508
BINDING SITE FOR RESIDUE BOG A 610
11
BC2
SOFTWARE
ARG A:30 , GLN A:34
BINDING SITE FOR RESIDUE BR A 611
12
BC3
SOFTWARE
TRP A:481
BINDING SITE FOR RESIDUE BR A 612
13
BC4
SOFTWARE
THR A:338 , THR B:338
BINDING SITE FOR RESIDUE BR A 613
14
BC5
SOFTWARE
SER A:374 , HIS A:377
BINDING SITE FOR RESIDUE BR A 614
15
BC6
SOFTWARE
ILE A:161 , PHE A:395 , LEU A:396 , BOG A:608 , HOH A:707 , MET B:476 , GLU B:477 , THR B:479 , HIS B:480 , VAL B:483 , TRP B:484 , ILE B:485 , ARG B:487
BINDING SITE FOR RESIDUE BOG B 601
16
BC7
SOFTWARE
GLY A:492 , LEU A:495 , PHE A:496 , ILE B:385 , LEU B:493 , LEU B:495 , PHE B:496
BINDING SITE FOR RESIDUE BOG B 602
17
BC8
SOFTWARE
ASN B:21 , ALA B:22 , GLY B:24 , LEU B:25 , GLY B:26 , TYR B:108 , PHE B:253 , THR B:254 , SER B:256 , PHE B:259 , SER B:355 , ILE B:359 , NA B:605
BINDING SITE FOR RESIDUE LEU B 603
18
BC9
SOFTWARE
GLY B:20 , VAL B:23 , ALA B:351 , THR B:354 , SER B:355
BINDING SITE FOR RESIDUE NA B 604
19
CC1
SOFTWARE
ALA B:22 , VAL B:23 , GLY B:24 , ASN B:27 , THR B:254 , ASN B:286 , LEU B:603
BINDING SITE FOR RESIDUE NA B 605
20
CC2
SOFTWARE
PHE B:31 , TYR B:47 , GLN B:250 , THR B:254 , SER B:290
BINDING SITE FOR RESIDUE BR B 606
21
CC3
SOFTWARE
SER B:165
BINDING SITE FOR RESIDUE BR B 607
22
CC4
SOFTWARE
PRO B:164 , SER B:165 , LEU B:166 , PHE B:388 , HIS B:391 , BOG B:609
BINDING SITE FOR RESIDUE BOG B 608
23
CC5
SOFTWARE
TRP A:484 , LYS B:163 , LEU B:392 , PHE B:395 , BOG B:608
BINDING SITE FOR RESIDUE BOG B 609
24
CC6
SOFTWARE
ARG B:30 , GLN B:34 , ALA B:319
BINDING SITE FOR RESIDUE BR B 610
25
CC7
SOFTWARE
BOG A:609 , SER B:374 , HIS B:377
BINDING SITE FOR RESIDUE BR B 611
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4hmka_ (A:)
1b: SCOP_d4hmkb_ (B:)
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Classes
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
SNF-like
(42)
Superfamily
:
SNF-like
(42)
Family
:
SNF-like
(42)
Protein domain
:
Na(+):neurotransmitter symporter homologue LeuT
(35)
Aquifex aeolicus [TaxId: 63363]
(35)
1a
d4hmka_
A:
1b
d4hmkb_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
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Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (174 KB)
Header - Asym.Unit
Biol.Unit 1 (86 KB)
Header - Biol.Unit 1
Biol.Unit 2 (86 KB)
Header - Biol.Unit 2
Biol.Unit 3 (168 KB)
Header - Biol.Unit 3
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