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(-) Description

Title :  CRYSTAL STRUCTURE OF LEUT-E290S WITH BOUND CL
 
Authors :  A. K. Kantcheva, M. Quick, L. Shi, A. M. L. Winther, S. Stolzenberg, H. We J. A. Javitch, P. Nissen
Date :  22 Oct 12  (Deposition) - 08 May 13  (Release) - 08 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Membrane Transporter, Leucine Transporter, Leucine, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Kantcheva, M. Quick, L. Shi, A. M. L. Winther, S. Stolzenberg, H. Weinstein, J. A. Javitch, P. Nissen
The Chloride Binding Site Of Neurotransmitter Sodium Symporters
Proc. Natl. Acad. Sci. Usa 2013
PubMed: search

(-) Compounds

Molecule 1 - TRANSPORTER
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SNF, AQ_2077
    Mutation: YES
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 224324
    Strain: VF5
    Synonym: LEUCINE TRANSPORTER

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric Unit (4, 9)
No.NameCountTypeFull Name
1BOG5Ligand/IonB-OCTYLGLUCOSIDE
2CL1Ligand/IonCHLORIDE ION
3LEU1Mod. Amino AcidLEUCINE
4NA2Ligand/IonSODIUM ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1BOG5Ligand/IonB-OCTYLGLUCOSIDE
2CL-1Ligand/IonCHLORIDE ION
3LEU1Mod. Amino AcidLEUCINE
4NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1BOG10Ligand/IonB-OCTYLGLUCOSIDE
2CL-1Ligand/IonCHLORIDE ION
3LEU2Mod. Amino AcidLEUCINE
4NA-1Ligand/IonSODIUM ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:22 , GLY A:24 , LEU A:25 , GLY A:26 , ASN A:27 , TYR A:108 , PHE A:253 , THR A:254 , SER A:256 , PHE A:259 , SER A:355 , ILE A:359 , NA A:602BINDING SITE FOR RESIDUE LEU A 601
2AC2SOFTWAREALA A:22 , ASN A:27 , THR A:254 , ASN A:286 , LEU A:601BINDING SITE FOR RESIDUE NA A 602
3AC3SOFTWAREGLY A:20 , VAL A:23 , GLY A:24 , ALA A:351 , THR A:354 , SER A:355BINDING SITE FOR RESIDUE NA A 603
4AC4SOFTWAREPHE A:31 , TYR A:47 , GLN A:250 , THR A:254 , SER A:290BINDING SITE FOR RESIDUE CL A 604
5AC5SOFTWAREARG A:142 , GLU A:146 , PRO A:445 , ARG A:446BINDING SITE FOR RESIDUE BOG A 605
6AC6SOFTWAREILE A:120 , LEU A:166 , PHE A:167 , GLY A:439BINDING SITE FOR RESIDUE BOG A 606
7AC7SOFTWAREPRO A:164 , LEU A:166 , BOG A:608BINDING SITE FOR RESIDUE BOG A 607
8AC8SOFTWARELYS A:163 , HIS A:391 , LEU A:392 , PHE A:395 , TRP A:484 , PHE A:488 , BOG A:607 , BOG A:609BINDING SITE FOR RESIDUE BOG A 608
9AC9SOFTWAREILE A:161 , PHE A:395 , LYS A:431 , MET A:476 , GLU A:477 , THR A:479 , HIS A:480 , VAL A:483 , TRP A:484 , ILE A:485 , ARG A:487 , BOG A:608BINDING SITE FOR RESIDUE BOG A 609

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HOD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HOD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HOD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HOD)

(-) Exons   (0, 0)

(no "Exon" information available for 4HOD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee..eehhhhhhhhh........hhhhhhhhhhhhhhhh....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hod A   5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPTDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKASVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRNHESAGTL 601
                                    14        24        34        44        54        64        74        84        94       104       114       124       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       601
                                                                                                                                                         132|                                                                                                                                                                                                                                                                                                                                                                                         515|
                                                                                                                                                          135                                                                                                                                                                                                                                                                                                                                                                                          601
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HOD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HOD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HOD)

(-) Gene Ontology  (9, 9)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O67854_AQUAE | O67854: 2a65 2q6h 2q72 2qb4 2qei 2qju 3f3a 3f3c 3f3d 3f3e 3f48 3f4i 3f4j 3gjc 3gjd 3gwu 3gwv 3gww 3mpn 3mpq 3qs4 3qs5 3qs6 3tt1 3tt3 3tu0 3usg 3usi 3usj 3usk 3usl 3usm 3uso 3usp 4fxz 4fy0 4hmk 4mm4 4mm5 4mm6 4mm7 4mm8 4mm9 4mma 4mmb 4mmc 4mmd 4mme 4mmf 5jae 5jaf 5jag

(-) Related Entries Specified in the PDB File

4hmk CRYSTAL STRUCTURE OF LEUT-E290S WITH BOUND BR