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(-) Description

Title :  STRUCTURE OF THE APPA-PPSR2 CORE COMPLEX FROM RB. SPHAEROIDES
 
Authors :  A. Winkler, U. Heintz, R. Lindner, J. Reinstein, R. Shoeman, I. Schlich
Date :  09 Oct 12  (Deposition) - 05 Jun 13  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Helix Bundle, Schic Domain, Pas Domain, Appa-Ppsr Complex, Flavoprotein-Transcription Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Winkler, U. Heintz, R. Lindner, J. Reinstein, R. L. Shoeman, I. Schlichting
A Ternary Appa-Ppsr-Dna Complex Mediates Light Regulation O Photosynthesis-Related Gene Expression.
Nat. Struct. Mol. Biol. V. 20 859 2013
PubMed-ID: 23728293  |  Reference-DOI: 10.1038/NSMB.2597

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, PPSR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM11
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-257
    Gene: PPSR, RHOS4_18870, RSP_0282
    Organism Common: RHODOPSEUDOMONAS SPHAEROIDES
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 272943
    Strain: 2.4.1
 
Molecule 2 - APPA PROTEIN
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 168-399
    Gene: APPA
    Mutation: YES
    Organism Common: RHODOPSEUDOMONAS SPHAEROIDES
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 1063
    Strain: 2.4.1

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HH3)

(-) Sites  (0, 0)

(no "Site" information available for 4HH3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HH3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HH3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HH3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HH3)

(-) Exons   (0, 0)

(no "Exon" information available for 4HH3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.eeeee.....eeeeee.........hhhhh..hhhhhhhhhhhhhhhhhhh..........eeeeee.....eeeeeeeeee......eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeehhhhhhhhh.hhhhhh..hhhhhh...hhhhhhhhhhhhhh......eeee......eeeeeeeeee....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hh3 A   7 LPSLAPDLVRDLIATAADISLLVSQEGVVREVMANPHHPSFGQLSEWEGRPLEEVLTAESVAKFRLRSEGLEPGRGSVAVELNHIDPRSFEFPIRYILHRLPADRSILMLGRDLRPIAEVQQQLVAAQLAMERDYETQREMETRYRVVLDVSRDPMVLVSMSTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLLCQIDPAD 257
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256 


Chain B from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh.eeeee.....eeeee.....hhhhh..hhhhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeeeee......eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...eeeee.....eeeehhhhhhhhh.hhhhhh...hhhhh...hhhhhhhhhhhhhhhh....eeee......eeeeeeeeeee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hh3 B   5 GSLPSLAPDLVRDLIATAADISLLVSQEGVVREVMASFGQLSEWEGRPLEEVLTAESVAKFRLRSEGLEPGRGSVAVELNHIEFPIRYILHRLPADRSILMLGRDLRPIAEVQQQLVAAQLAMERDYETQREMETRYRVVLDVSRDPMVLVSMSTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLLCQIDPAD 257
                                    14        24        34     || 49        59        69        79        89 ||    104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254   
                                                              40|                                           91|                                                                                                                                                                
                                                               46                                            97                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.........eeeeee......hhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hh3 C 184 GRSGRAKAVARLSDLLSTDPLGRLTEVEELLRAHAPTAADFARLFEACAERLTRALAEDRISRMQVTLAYSALQMALRRIHHLPDPQKSVGAVLVAGVPGHKPILEAALAAEMLRAVGWSTSVVHPESVAALAARLKTSRTSTLVVAPSLLEGTEQEADTLRFVSALRARTDLPGLSILVGGRLAQLPPSKLKDSGADAGFAHLALLPAALARVASS 400
                                   193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HH3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HH3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HH3)

(-) Gene Ontology  (6, 6)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3J179_RHOS4 | Q3J179: 4hh2 4l9e 4l9f 4l9g
        Q53119_RHOSH | Q53119: 1yrx 2bun 4heh 4hh0 4hh1

(-) Related Entries Specified in the PDB File

4hh0 STRUCTURE OF APPA C20S WITHOUT THE CYS-RICH REGION
4hh1 STRUCTURE OF APPA WILD-TYPE WITHOUT THE CYS-RICH REGION
4hh2 STRUCTURE OF PPSR WITHOUT THE HTH MOTIF