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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF PPSR WITHOUT THE HTH MOTIF FROM RB. SPHAEROIDES
 
Authors :  A. Winkler, U. Heintz, R. Lindner, J. Reinstein, R. Shoeman, I. Schlich
Date :  09 Oct 12  (Deposition) - 05 Jun 13  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Triple Pas Domain, Q-Linker, Dna-Binding, Appa, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Winkler, U. Heintz, R. Lindner, J. Reinstein, R. L. Shoeman, I. Schlichting
A Ternary Appa-Ppsr-Dna Complex Mediates Light Regulation O Photosynthesis-Related Gene Expression.
Nat. Struct. Mol. Biol. V. 20 859 2013
PubMed-ID: 23728293  |  Reference-DOI: 10.1038/NSMB.2597

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, PPSR
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM11
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-379
    Gene: PPSR, RHOS4_18870, RSP_0282
    Organism Common: RHODOPSEUDOMONAS SPHAEROIDES
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 272943
    Strain: 2.4.1

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HH2)

(-) Sites  (0, 0)

(no "Site" information available for 4HH2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HH2)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg C:94 -Ser C:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HH2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HH2)

(-) Exons   (0, 0)

(no "Exon" information available for 4HH2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:370
                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh.eeeee.....eeeeee........hhhhhh..hhhhhhhhhhhhhhhhhhh........eeeeeeee.....eeeeeeeeee......eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeehhhhhhhhh.hhhhhh..hhhh.ee.....hhhhhhhhhhh......eeeee.....eeeeeeeeeee..eeeeeeeeee.....hhhhhhhhhhhhhh..eeeeee....eeeehhhhhhhh...hhhhhh..hhhhhh..hhhhhhhhhhhhhhhheeeeeeeee.......eeeeeeeeee......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hh2 A   6 SLPSLAPDLVRDLIATAADISLLVSQEGVVREVMANPHHPSFGQLSEWEGRPLEEVLTAESVAKFRLRSEGLEPGRGSVAVELNHIDPRSFEFPIRYILHRLPADRSILMLGRDLRPIAEVQQQLVAAQLAMERDYETQREMETRYRVVLDVSRDPMVLVSMSTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLLCQIDPADAVGDELSENLARLYHEGVDGIVFSDADGTIRGANEAFLNMTDSSSLAAIRGRSIADFLARGSVDLRVLIDSVRRTGQLRLYATRLTTDFAGQIAAEISATWLDDRERPLLVLVVRDTS 378
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255  ||   268       278       288       298       308       318       328       338       348       358       368       378
                                                                                                                                                                                                                                                                                      258|                                                                                                                    
                                                                                                                                                                                                                                                                                       262                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh.eeeee.....eeeeee.........hhhhh..hhhhh.hhhhhhhhhhhh.........eeeee...hhhhhh..eeeeeee......eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeehhhhhhhhh.hhhhhh..hhhhhh...hhhhhhhhhhhhhhhh....eeee......eeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhh..eeeeee....eeeehhhhhhhh...hhhhhh..hhhhhh..hhhhhhhhhhhhhhh.eeeeeeeeee.....eeeeeeeeee.......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hh2 B   6 SLPSLAPDLVRDLIATAADISLLVSQEGVVREVMANPHHPSFGQLSEWEGRPLEEVLTAESVAKFRLRSEGLEPGRGSVAVELNHIDPRSFEFPIRYILHRLPADRSILMLGRDLRPIAEVQQQLVAAQLAMERDYETQREMETRYRVVLDVSRDPMVLVSMSTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLLCQIDPADAGDELSENLARLYHEGVDGIVFSDADGTIRGANEAFLNMTDSSSLAAIRGRSIADFLARGSVDLRVLIDSVRRTGQLRLYATRLTTDFAGQIAAEISATWLDDRERPLLVLVVRDTS 378
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255  ||   269       279       289       299       309       319       329       339       349       359       369         
                                                                                                                                                                                                                                                                                      258|                                                                                                                   
                                                                                                                                                                                                                                                                                       263                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:370
                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh.eeeee.....eeeeee........hhhhhh..hhhhhhhhhhhhhhhhhhhhh......eeeeeeee.....eeeeeeeeee......eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeehhhhhhhhh.hhhhhh..hhhhhh...hhhhhhhhhhhhhhhh....eeee......eeeeeeeeeee..eeeeeeeeee.....hhhhhhhhhhhhhh..eeeeee....eeeehhhhhhhhh..hhhhhh..hhhhhh..hhhhhhhhhhhhhhhheeeeeeeee.......eeeeeeeeee......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hh2 C   6 SLPSLAPDLVRDLIATAADISLLVSQEGVVREVMANPHHPSFGQLSEWEGRPLEEVLTAESVAKFRLRSEGLEPGRGSVAVELNHIDPRSFEFPIRYILHRLPADRSILMLGRDLRPIAEVQQQLVAAQLAMERDYETQREMETRYRVVLDVSRDPMVLVSMSTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLLCQIDPADAVGDELSENLARLYHEGVDGIVFSDADGTIRGANEAFLNMTDSSSLAAIRGRSIADFLARGSVDLRVLIDSVRRTGQLRLYATRLTTDFAGQIAAEISATWLDDRERPLLVLVVRDTS 378
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255  ||   268       278       288       298       308       318       328       338       348       358       368       378
                                                                                                                                                                                                                                                                                      258|                                                                                                                    
                                                                                                                                                                                                                                                                                       262                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh.eeeee.....eeeeee...hhhhhhhhhhh........hhhhhhhhhhhhhhh......eeeeeeee.....eeeeeeeeee......eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeehhhhhhhhh.hhhhhh...hhhhh.....hhhhhhhhhhhhh.....eeee......eeeeeeeeeee..eeeeeeeeee........hhhhhhhhhhhhhh..eeeee.....eeeehhhhhhhh...........hhhhh...hhhhhhhhhhhhhhhheeeeeeeeeee...eeeeeeeeeeee......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hh2 D   6 SLPSLAPDLVRDLIATAADISLLVSQEGVVREVMANPHHPSFGQLSEWEGRPLEEVLTAESVAKFRLRSEGLEPGRGSVAVELNHIDPRSFEFPIRYILHRLPADRSILMLGRDLRPIAEVQQQLVAAQLAMERDYETQREMETRYRVVLDVSRDPMVLVSMSTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLLCQIDPADATQPVGDELSENLARLYHEGVDGIVFSDADGTIRGANEAFLNMTDSSSLAAIRGRSIADFLARGSVDLRVLIDSVRRTGQLRLYATRLTTDFAGQIAAEISATWLDDRERPLLVLVVRDTS 378
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HH2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HH2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HH2)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4hh2)
 
  Cis Peptide Bonds
    Arg C:94 - Ser C:95   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3J179_RHOS4 | Q3J179: 4hh3 4l9e 4l9f 4l9g

(-) Related Entries Specified in the PDB File

4hh0 STRUCTURE OF APPA C20S WITHOUT THE CYS-RICH REGION
4hh1 STRUCTURE OF APPA WILD-TYPE WITHOUT THE CYS-RICH REGION
4hh3 STRUCTURE OF THE APPA PPSR2 CORE COMPLEX