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(-) Description

Title :  THE GLIC PENTAMERIC LIGAND-GATED ION CHANNEL F14'A ETHANOL-SENSITIVE MUTANT COMPLEXED TO ETHANOL
 
Authors :  L. Sauguet, R. J. Howard, L. Malherbe, U. S. Lee, P. J. Corringer, R. A. Ha M. Delarue
Date :  05 Oct 12  (Deposition) - 17 Apr 13  (Release) - 03 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Pentameric Transmembrane Channel, Ion-Channel, Membrane Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Sauguet, R. J. Howard, L. Malherbe, U. S. Lee, P. J. Corringer, R. A. Harris, M. Delarue
Structural Basis For Potentiation By Alcohols And Anaesthetics In A Ligand-Gated Ion Channel.
Nat Commun V. 4 1697 2013
PubMed-ID: 23591864  |  Reference-DOI: 10.1038/NCOMMS2682

(-) Compounds

Molecule 1 - PROTON-GATED ION CHANNEL
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 C43
    Expression System Taxid: 511693
    Fragment: UNP RESIDUES 44-359
    Gene: GLVI, GLR4197
    Mutation: YES
    Organism Scientific: GLOEOBACTER VIOLACEUS
    Organism Taxid: 251221
    Strain: PCC 7421
    Synonym: GLIC, LIGAND-GATED ION CHANNEL, LGIC

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 49)

Asymmetric/Biological Unit (7, 49)
No.NameCountTypeFull Name
1ACT10Ligand/IonACETATE ION
2CL7Ligand/IonCHLORIDE ION
3EOH5Ligand/IonETHANOL
4LMT6Ligand/IonDODECYL-BETA-D-MALTOSIDE
5NA6Ligand/IonSODIUM ION
6PLC5Ligand/IonDIUNDECYL PHOSPHATIDYL CHOLINE
7UNL10Ligand/IonUNKNOWN LIGAND

(-) Sites  (38, 38)

Asymmetric Unit (38, 38)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:77 , ILE A:131 , GLU A:181 , PHE E:42 , ARG E:105BINDING SITE FOR RESIDUE ACT A 401
02AC2SOFTWAREPHE A:78 , ARG A:85BINDING SITE FOR RESIDUE CL A 402
03AC3SOFTWAREASN A:139 , LEU A:180 , ALA D:175BINDING SITE FOR RESIDUE CL A 403
04AC4SOFTWAREALA A:175BINDING SITE FOR RESIDUE CL A 404
05AC5SOFTWAREPRO A:68 , ILE A:71 , ILE A:73BINDING SITE FOR RESIDUE NA A 405
06AC6SOFTWAREILE A:236 , ASN A:239 , ILE A:240 , GLU A:243 , TYR A:263 , ASN E:200BINDING SITE FOR RESIDUE EOH A 407
07AC7SOFTWAREILE A:73 , PRO A:74 , ILE A:76 , ARG A:85 , TYR A:102BINDING SITE FOR RESIDUE ACT A 408
08AC8SOFTWARELMT C:405 , LMT E:405BINDING SITE FOR RESIDUE LMT A 409
09AC9SOFTWAREALA A:237 , ILE A:240 , THR B:244BINDING SITE FOR RESIDUE LMT A 410
10BC1SOFTWAREARG A:118 , PHE A:121 , TYR A:194 , TYR A:254 , ASN A:307BINDING SITE FOR RESIDUE PLC A 411
11BC2SOFTWAREPHE A:42 , ARG A:105 , ARG B:77 , ILE B:131 , GLU B:181BINDING SITE FOR RESIDUE ACT B 401
12BC3SOFTWAREPHE B:78 , ARG B:85BINDING SITE FOR RESIDUE CL B 402
13BC4SOFTWAREPRO B:68 , ILE B:71 , ILE B:73BINDING SITE FOR RESIDUE NA B 403
14BC5SOFTWAREILE B:73 , PRO B:74 , ILE B:76 , ARG B:85 , TYR B:102BINDING SITE FOR RESIDUE ACT B 404
15BC6SOFTWAREALA A:237 , ALA B:237BINDING SITE FOR RESIDUE LMT B 405
16BC7SOFTWAREASN A:200 , PRO A:204 , ASN B:239 , ILE B:240 , GLU B:243 , TYR B:263BINDING SITE FOR RESIDUE EOH B 406
17BC8SOFTWAREARG B:118 , PHE B:121 , TYR B:194 , TYR B:254 , ASN B:307BINDING SITE FOR RESIDUE PLC B 407
18BC9SOFTWAREPHE B:42 , ARG B:105 , ARG C:77 , ILE C:131 , GLU C:181BINDING SITE FOR RESIDUE ACT C 401
19CC1SOFTWAREPHE C:78 , ARG C:85BINDING SITE FOR RESIDUE CL C 402
20CC2SOFTWAREPRO C:68 , ILE C:71BINDING SITE FOR RESIDUE NA C 403
21CC3SOFTWAREILE C:73 , PRO C:74 , ILE C:76 , ARG C:85 , TYR C:102BINDING SITE FOR RESIDUE ACT C 404
22CC4SOFTWARELMT A:409BINDING SITE FOR RESIDUE LMT C 405
23CC5SOFTWAREASN B:200 , ASN C:239 , ILE C:240 , GLU C:243 , TYR C:263BINDING SITE FOR RESIDUE EOH C 406
24CC6SOFTWAREARG C:118 , PHE C:121 , TYR C:194 , TYR C:254 , ASN C:307BINDING SITE FOR RESIDUE PLC C 407
25CC7SOFTWAREPHE C:42 , ARG C:105 , ARG D:77 , ILE D:131 , GLU D:181BINDING SITE FOR RESIDUE ACT D 401
26CC8SOFTWAREASN C:200 , ASN D:239 , GLU D:243BINDING SITE FOR RESIDUE EOH D 402
27CC9SOFTWAREASN D:200 , LEU D:241 , ASN E:239 , ILE E:240 , GLU E:243 , TYR E:263BINDING SITE FOR RESIDUE EOH D 403
28DC1SOFTWAREPHE D:78 , ARG D:85BINDING SITE FOR RESIDUE CL D 404
29DC2SOFTWAREVAL D:5 , ILE D:71 , ILE D:73BINDING SITE FOR RESIDUE NA D 405
30DC3SOFTWAREILE D:73 , PRO D:74 , ILE D:76 , ARG D:85 , TYR D:102BINDING SITE FOR RESIDUE ACT D 406
31DC4SOFTWAREILE D:233 , ALA D:237BINDING SITE FOR RESIDUE LMT D 407
32DC5SOFTWAREARG D:118 , PHE D:121 , TYR D:194 , TYR D:254BINDING SITE FOR RESIDUE PLC D 408
33DC6SOFTWAREPHE D:42 , ARG D:105 , ARG E:77 , ILE E:131 , GLU E:181BINDING SITE FOR RESIDUE ACT E 401
34DC7SOFTWAREPHE E:78 , ARG E:85BINDING SITE FOR RESIDUE CL E 402
35DC8SOFTWAREPRO E:68 , ILE E:71BINDING SITE FOR RESIDUE NA E 403
36DC9SOFTWAREPRO E:74 , ILE E:76 , ARG E:85 , TYR E:102BINDING SITE FOR RESIDUE ACT E 404
37EC1SOFTWARELMT A:409 , ALA D:237 , ILE E:240BINDING SITE FOR RESIDUE LMT E 405
38EC2SOFTWAREARG E:118 , PHE E:121 , TYR E:194 , TYR E:254 , ASN E:307BINDING SITE FOR RESIDUE PLC E 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HFE)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Tyr A:119 -Pro A:120
2Tyr B:119 -Pro B:120
3Tyr C:119 -Pro C:120
4Tyr D:119 -Pro D:120
5Tyr E:119 -Pro E:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HFE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HFE)

(-) Exons   (0, 0)

(no "Exon" information available for 4HFE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee.hhhhh....eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfe A   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAANILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 315
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314 


Chain B from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee.hhhhh....eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeee....eeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfe B   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAANILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 315
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314 


Chain C from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee.hhhhh....eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfe C   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAANILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 315
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314 


Chain D from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee.hhhhh....eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfe D   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAANILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 315
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314 


Chain E from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee.hhhhh....eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeee....eeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfe E   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAANILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 315
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HFE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HFE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HFE)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  4hfe
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLIC_GLOVI | Q7NDN8: 2xq3 2xq4 2xq5 2xq6 2xq7 2xq8 2xq9 2xqa 3eam 3ehz 3ei0 3igq 3lsv 3p4w 3p50 3tls 3tlt 3tlu 3tlv 3tlw 3uu3 3uu4 3uu5 3uu6 3uu8 3uub 4f8h 4hfb 4hfc 4hfd 4hfh 4hfi 4il4 4il9 4ila 4ilb 4ilc 4ire 4lmj 4lmk 4lml 4npp 4npq 4qh1 4qh4 4qh5 4x5t 4yeu 4zzb 4zzc 5hcj 5hcm 5heg 5heh 5iux 5j0z 5l47 5l4e 5l4h

(-) Related Entries Specified in the PDB File

4hfb 4hfc 4hfd 4hfh