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(-) Description

Title :  ALPHA 1 GLYCINE RECEPTOR TRANSMEMBRANE STRUCTURE FUSED TO THE EXTRACELLULAR DOMAIN OF GLIC
 
Authors :  L. Sauguet, P. J. Corringer, C. Huon, M. Delarue
Date :  05 Dec 14  (Deposition) - 25 Feb 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Cys-Loop, Receptor Pentameric, Glycine Receptor, Transmembrane Receptor, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Moraga-Cid, L. Sauguet, C. Huon, L. Malherbe, C. Girard-Blanc, S. Petres, S. Murail, A. Taly, M. Baaden, M. Delarue, P. J. Corringer
Allosteric And Hyperekplexic Mutant Phenotypes Investigated On An Alpha 1 Glycine Receptor Transmembrane Structure.
Proc. Natl. Acad. Sci. Usa V. 112 2865 2015
PubMed-ID: 25730860  |  Reference-DOI: 10.1073/PNAS.1417864112

(-) Compounds

Molecule 1 - PROTON-GATED ION CHANNEL,GLRA1 PROTEIN,GLRA1 PROTEIN
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GLVI, GLR4197, GLRA1
    Organism Common: HUMAN
    Organism Scientific: GLOEOBACTER VIOLACEUS, HOMO SAPIENS
    Organism Taxid: 251221, 9606
    Strain: PCC 7421
    Synonym: GLIC,LIGAND-GATED ION CHANNEL,LGIC

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric/Biological Unit (3, 17)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2CL6Ligand/IonCHLORIDE ION
3NI6Ligand/IonNICKEL (II) ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:86 , ALA A:87 , ASP A:88binding site for residue NI A 501
02AC2SOFTWAREPHE A:78 , ARG A:85binding site for residue CL A 502
03AC3SOFTWAREARG A:77 , ILE A:131 , GLU A:181 , PHE E:42 , ARG E:105binding site for residue ACT A 503
04AC4SOFTWAREASP B:86 , ALA B:87 , ASP B:88binding site for residue NI B 501
05AC5SOFTWAREPRO B:74 , ILE B:76 , ARG B:85binding site for residue CL B 502
06AC6SOFTWAREPHE B:78 , ARG B:85binding site for residue CL B 503
07AC7SOFTWAREPHE A:42 , ARG A:105 , ARG B:77 , ILE B:131 , GLU B:181binding site for residue ACT B 504
08AC8SOFTWAREASP C:86 , ALA C:87 , ASP C:88binding site for residue NI C 501
09AC9SOFTWAREPHE C:78 , ARG C:85binding site for residue CL C 502
10AD1SOFTWAREPRO C:74 , ILE C:76 , ARG C:85binding site for residue CL C 503
11AD2SOFTWAREPHE B:42 , ARG B:105 , ARG C:77 , ILE C:131 , GLU C:181binding site for residue ACT C 504
12AD3SOFTWAREPRO D:74 , ARG D:85binding site for residue NI D 501
13AD4SOFTWAREASP D:86 , ALA D:87 , ASP D:88binding site for residue NI D 502
14AD5SOFTWAREPHE C:42 , ARG C:105 , ARG D:77 , ILE D:131 , GLU D:181binding site for residue ACT D 503
15AD6SOFTWAREASP E:86 , ALA E:87 , ASP E:88binding site for residue NI E 501
16AD7SOFTWAREPHE E:78 , ARG E:85binding site for residue CL E 502
17AD8SOFTWAREPHE D:42 , ARG D:105 , ARG E:77 , ILE E:131 , GLU E:181binding site for residue ACT E 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X5T)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Phe A:119 -Pro A:120
2Phe B:119 -Pro B:120
3Phe C:119 -Pro C:120
4Phe D:119 -Pro D:120
5Phe E:119 -Pro E:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X5T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X5T)

(-) Exons   (0, 0)

(no "Exon" information available for 4X5T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee..........eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x5t A   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRFPMDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQMGYYLIQMYIPSLLIVILSWISFWAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQSQPQRAKKIDKISRIGFPMAFLIFNMFYWIIYF 411
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      |220       230       240  ||   255       265       275       285       295       305       383       393       403        
                                                                                                                                                                                                                    191|                      243|                                                             313|                             
                                                                                                                                                                                                                     218                       249                                                              382                             


Chain B from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee..........eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x5t B   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRFPMDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQMGYYLIQMYIPSLLIVILSWISFWAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQSQPQRAKKIDKISRIGFPMAFLIFNMFYWIIYF 411
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      |220       230       240  ||   255       265       275       285       295       305       383       393       403        
                                                                                                                                                                                                                    191|                      243|                                                             313|                             
                                                                                                                                                                                                                     218                       249                                                              382                             


Chain C from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee..........eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x5t C   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRFPMDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQMGYYLIQMYIPSLLIVILSWISFWAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQSQPQRAKKIDKISRIGFPMAFLIFNMFYWIIYF 411
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      |220       230       240  ||   255       265       275       285       295       305       383       393       403        
                                                                                                                                                                                                                    191|                      243|                                                             313|                             
                                                                                                                                                                                                                     218                       249                                                              382                             


Chain D from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee..........eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x5t D   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRFPMDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQMGYYLIQMYIPSLLIVILSWISFWAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQSQPQRAKKIDKISRIGFPMAFLIFNMFYWIIYF 411
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      |220       230       240  ||   255       265       275       285       295       305       383       393       403        
                                                                                                                                                                                                                    191|                      243|                                                             313|                             
                                                                                                                                                                                                                     218                       249                                                              382                             


Chain E from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee..........eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x5t E   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRFPMDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQMGYYLIQMYIPSLLIVILSWAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQSQPQRAKKIDKISRIGFPMAFLIFNMFYWIIYF 411
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      |220       230       249       259       269       279       289       299       309   ||  387       397       407    
                                                                                                                                                                                                                    191|                  239|                                                             313|                             
                                                                                                                                                                                                                     218                   249                                                              382
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X5T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X5T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X5T)

(-) Gene Ontology  (67, 86)

Asymmetric/Biological Unit(hide GO term definitions)

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  GLRA1_HUMAN | P23415
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLIC_GLOVI | Q7NDN8: 2xq3 2xq4 2xq5 2xq6 2xq7 2xq8 2xq9 2xqa 3eam 3ehz 3ei0 3igq 3lsv 3p4w 3p50 3tls 3tlt 3tlu 3tlv 3tlw 3uu3 3uu4 3uu5 3uu6 3uu8 3uub 4f8h 4hfb 4hfc 4hfd 4hfe 4hfh 4hfi 4il4 4il9 4ila 4ilb 4ilc 4ire 4lmj 4lmk 4lml 4npp 4npq 4qh1 4qh4 4qh5 4yeu 4zzb 4zzc 5hcj 5hcm 5heg 5heh 5iux 5j0z 5l47 5l4e 5l4h
        GLRA1_HUMAN | P23415: 1mot 1vry 2m6b 2m6i

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4X5T)