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(-) Description

Title :  FOCAL ADHESION KINASE CATALYTIC DOMAIN IN COMPLEX WITH (2-FLUORO-PHENYL)-(1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YL)-AMINE
 
Authors :  D. Musil
Date :  29 Aug 12  (Deposition) - 04 Sep 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Protein Tyrosine Kinase, Transferase, Atp Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Heinrich, J. Seenisamy, L. Emmanuvel, S. S. Kulkarni, J. Bomke, F. Rohdich, H. Greiner, C. Esdar, M. Krier, U. Gradler, D. Musil
Fragment-Based Discovery Of New Highly Substituted 1H-Pyrrolo[2, 3-B]- And 3H-Imidazolo[4, 5-B]-Pyridines As Focal Adhesion Kinase Inhibitors.
J. Med. Chem. V. 56 1160 2013
PubMed-ID: 23294348  |  Reference-DOI: 10.1021/JM3016014

(-) Compounds

Molecule 1 - FOCAL ADHESION KINASE 1
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Fragment: CATALYTIC PROTEIN KINASE DOMAIN RESIDES 410-686
    Gene: PTK2, FAK, FAK1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FADK 1, FOCAL ADHESION KINASE-RELATED NONKINASE, FRNK, PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 71, PPP1R71, PROTEIN- TYROSINE KINASE 2, P125FAK, PP125FAK

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
14GU2Ligand/IonN-(2-FLUOROPHENYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
14GU1Ligand/IonN-(2-FLUOROPHENYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
14GU1Ligand/IonN-(2-FLUOROPHENYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:428 , VAL A:436 , ALA A:452 , VAL A:484 , MET A:499 , GLU A:500 , CYS A:502 , LEU A:553BINDING SITE FOR RESIDUE 4GU A 701
2AC2SOFTWAREILE B:428 , GLY B:429 , VAL B:436 , ALA B:452 , VAL B:484 , MET B:499 , GLU B:500 , CYS B:502 , LEU B:553BINDING SITE FOR RESIDUE 4GU B 701

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:456 -A:459
2B:456 -B:459

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn A:493 -Pro A:494
2Asn B:493 -Pro B:494

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GU9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GU9)

(-) Exons   (0, 0)

(no "Exon" information available for 4GU9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains d4gu9a_ A: Focal adhesion kinase 1 (fak)                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhh.eeeeeeeee....eeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhh.........eeeee.....eeeee....eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..eeee....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gu9 A 414 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKA 685
                                   423       433       443||     455       465       475       485       495       505       515       525       535       545       555       565|      593       603       613       623       633       643       653       663       673       683  
                                                        444|                                                                                                                   565|                                                                                                     
                                                         447                                                                                                                    584                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains d4gu9b_ B: Focal adhesion kinase 1 (fak)                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee....eeeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhh.........eeeee.....eeeee....eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..eeee....hhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu9 B 415 YEIQRERIELGRCIGEGQFGDVHQGIYMSPPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 683
                                   424       434       444|      456       466       476       486       496       506       516       526       536       546       556       566    || 588       598       608       618       628       638       648       658       668       678     
                                                       444|                                                                                                                         571|                                                                                                   
                                                        447                                                                                                                          584
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GU9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GU9)

(-) Gene Ontology  (89, 89)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAK1_HUMAN | Q05397: 1k04 1k05 1mp8 1ow6 1ow7 1ow8 2etm 2ijm 3b71 3bz3 3pxk 3s9o 4ebv 4ebw 4gu6 4i4e 4i4f 4k8a 4k9y 4kab 4kao 4ny0 4q9s

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4GU9)