4GTF - JenaLib

Title :   T. MARITIMA FDTS (H53A MUTANT) WITH FAD, DUMP AND FOLATE

Authors :   I. I. Mathews, S. A. Lesley, A. Kohen

Date :   28 Aug 12 (Deposition) - 17 Oct 12 (Release) - 17 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.77

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Flavin-Dependent Thymidylate Synthase, Tm0449, H53A Mutant, Fad, 5, 10-Methylenetetrahydrofolate, Dump, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. M. Koehn, L. L. Perissinotti, S. Moghram, A. Prabhakar, S. A. Lesley I. I. Mathews, A. Kohen
Folate Binding Site Of Flavin-Dependent Thymidylate Synthase.
Proc. Natl. Acad. Sci. Usa V. 109 15722 2012
PubMed-ID: 23019356 | Reference-DOI: 10.1073/PNAS.1206077109

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	MEF	1	Ligand/Ion	N-({4-[(6AR)-3-AMINO-1-OXO-1,2,5,6,6A,7-HEXAHYDROIMIDAZO[1,5-F]PTERIDIN-8(9H)-YL]PHENYL}CARBONYL)-L-GLUTAMIC ACID
4	UMP	1	Ligand/Ion	2'-DEOXYURIDINE 5'-MONOPHOSPHATE

Biological Unit 1 (3, 12)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	MEF	4	Ligand/Ion	N-({4-[(6AR)-3-AMINO-1-OXO-1,2,5,6,6A,7-HEXAHYDROIMIDAZO[1,5-F]PTERIDIN-8(9H)-YL]PHENYL}CARBONYL)-L-GLUTAMIC ACID
4	UMP	4	Ligand/Ion	2'-DEOXYURIDINE 5'-MONOPHOSPHATE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:30 , THR A:55 , GLU A:58 , ARG A:78 , HIS A:79 , ARG A:80 , ILE A:81 , ASN A:85 , GLU A:86 , SER A:88 , TYR A:91 , ASN A:163 , ARG A:165 , ASN A:169 , LEU A:173 , ARG A:174 , HIS A:178 , UMP A:302 , MEF A:303 , HOH A:406 , HOH A:431 , HOH A:433 , HOH A:434 , HOH A:435 , HOH A:447 , HOH A:481 , HOH A:501 , HOH A:513	BINDING SITE FOR RESIDUE FAD A 301
2	AC2	SOFTWARE	ARG A:74 , GLN A:75 , ARG A:78 , GLU A:86 , LEU A:87 , SER A:88 , GLY A:89 , ARG A:90 , ARG A:147 , ARG A:174 , FAD A:301 , HOH A:402 , HOH A:405 , HOH A:422	BINDING SITE FOR RESIDUE UMP A 302
3	AC3	SOFTWARE	ALA A:27 , ARG A:28 , SER A:30 , PHE A:31 , LEU A:44 , LEU A:48 , ALA A:53 , THR A:55 , ASN A:85 , TYR A:91 , LEU A:173 , FAD A:301 , HOH A:411 , HOH A:435 , HOH A:507	BINDING SITE FOR RESIDUE MEF A 303
4	AC4	SOFTWARE	TYR A:96	BINDING SITE FOR RESIDUE CL A 304

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains d4gtfa_ A: Thy1 homologue                                                                                                                                                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeeeeeee.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhh.eeeeeeeeehhhhhhhh.....eeee...............hhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh....eeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gtf A   1 MKIDILDKGFVELVDVMGNDLSAVRAARVSFDMKDEERDRHLIEYLMKHGAETPFEHIVFTFHVKAPIFVARQWFRHRIASYNELSGRYSKLSYEFYIPSPERLEGYKTTIPPERVTEKISEIVDKAYRTYLELIESGVPREVARIVLPLNLYTRFFWTVNARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCPWTFEAFLKYAYKGDIL 215
                                    10        20        30  ||    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212   
                                                           33|                                                                                                                                                                                   
                                                            36

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
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Biological Unit
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		Biological Unit 1	[ Jena3D ]

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