4GT9 - JenaLib

Title :   T. MARITIMA FDTS WITH FAD, DUMP AND FOLATE.

Authors :   I. I. Mathews, S. A. Lesley, A. Kohen

Date :   28 Aug 12 (Deposition) - 17 Oct 12 (Release) - 17 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.39

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Flavin-Dependent Thymidylate Synthase, Tm0449, Fad, Dump, 5, 10- Methylenetetrahydrofolate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. M. Koehn, L. L. Perissinotti, S. Moghram, A. Prabhakar, S. A. Lesley I. I. Mathews, A. Kohen
Folate Binding Site Of Flavin-Dependent Thymidylate Synthase.
Proc. Natl. Acad. Sci. Usa V. 109 15722 2012
PubMed-ID: 23019356 | Reference-DOI: 10.1073/PNAS.1206077109

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 6)

Asymmetric Unit (5, 6)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	MEF	2	Ligand/Ion	N-({4-[(6AR)-3-AMINO-1-OXO-1,2,5,6,6A,7-HEXAHYDROIMIDAZO[1,5-F]PTERIDIN-8(9H)-YL]PHENYL}CARBONYL)-L-GLUTAMIC ACID
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	UMP	1	Ligand/Ion	2'-DEOXYURIDINE 5'-MONOPHOSPHATE

Biological Unit 1 (4, 20)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	MEF	8	Ligand/Ion	N-({4-[(6AR)-3-AMINO-1-OXO-1,2,5,6,6A,7-HEXAHYDROIMIDAZO[1,5-F]PTERIDIN-8(9H)-YL]PHENYL}CARBONYL)-L-GLUTAMIC ACID
4	PEG	4	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	UMP	4	Ligand/Ion	2'-DEOXYURIDINE 5'-MONOPHOSPHATE

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:55 , GLU A:58 , ARG A:78 , HIS A:79 , ARG A:80 , ILE A:81 , ASN A:85 , GLU A:86 , SER A:88 , ASN A:163 , ARG A:165 , ASN A:169 , LEU A:173 , ARG A:174 , HIS A:178 , UMP A:302 , MEF A:303 , HOH A:405 , HOH A:407 , HOH A:418 , HOH A:424 , HOH A:425 , HOH A:426 , HOH A:469 , HOH A:498 , HOH A:528 , HOH A:531 , HOH A:592	BINDING SITE FOR RESIDUE FAD A 301
2	AC2	SOFTWARE	ARG A:74 , GLN A:75 , ARG A:78 , GLU A:86 , LEU A:87 , SER A:88 , GLY A:89 , ARG A:90 , ARG A:147 , ARG A:174 , FAD A:301 , HOH A:401 , HOH A:408 , HOH A:452	BINDING SITE FOR RESIDUE UMP A 302
3	AC3	SOFTWARE	ALA A:27 , ARG A:28 , LEU A:44 , HIS A:53 , THR A:55 , ASN A:85 , LEU A:173 , FAD A:301 , PEG A:305 , HOH A:426 , HOH A:432 , HOH A:533 , HOH A:552 , HOH A:601	BINDING SITE FOR RESIDUE MEF A 303
4	AC4	SOFTWARE	LEU A:106 , TYR A:109 , LYS A:110 , THR A:111 , THR A:112 , PRO A:114 , PRO A:115 , HOH A:456	BINDING SITE FOR RESIDUE MEF A 304
5	AC5	SOFTWARE	TYR A:91 , MEF A:303 , HOH A:592	BINDING SITE FOR RESIDUE PEG A 305
6	AC6	SOFTWARE	TYR A:96 , HOH A:474	BINDING SITE FOR RESIDUE CL A 306

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains d4gt9a_ A: Thy1 homologue                                                                                                                                                                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eeeeeeeee.hhhhhhhhhhh......hhhhhhhhhhhhhh.hhhhhh.eeeeeeeeehhhhhhhh.....eeee...............hhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh....eeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gt9 A   0 HMKIDILDKGFVELVDVMGNDLSAVRAARVSFDMGEERDRHLIEYLMKHGHETPFEHIVFTFHVKAPIFVARQWFRHRIASYNELSGRYSKLSYEFYIPSPERLEGYKTTIPPERVTEKISEIVDKAYRTYLELIESGVPREVARIVLPLNLYTRFFWTVNARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCPWTFEAFLKYAYKGDILK 216
                                     9        19        29    ||  42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212    
                                                             34|                                                                                                                                                                                  
                                                              38

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4gt9)

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