Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  THE CONFORMATIONS AND INTERACTIONS OF THE FOUR-LAYER AGGREGATE REVEALED BY X-RAY CRYSTALLOGRAPHY DIFFRACTION IMPLIED THE IMPORTANCE OF PEPTIDES AT OPPOSITE ENDS IN THEIR ASSEMBLIES
 
Authors :  X. Y. Li, B. A. Song, D. Y. Hu, X. Chen, Z. C. Wang, M. J. Zeng, D. D. Yu, Z. Che L. H. Jin, S. Yang
Date :  23 Aug 12  (Deposition) - 28 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.06
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,h,i
Biol. Unit 1:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x),I (1x),J (1x),K (1x),L (1x),M (1x),N (1x),O (1x),P (1x),Q (1x)
Biol. Unit 2:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x),I (1x),J (1x),K (1x),L (1x),M (1x),N (1x),O (1x),P (1x),Q (1x)
Biol. Unit 3:  R (1x),S (1x),T (1x),U (1x),V (1x),W (1x),X (1x),Y (1x),Z (1x),a (1x),b (1x),c (1x),d (1x),e (1x),f (1x),h (1x),i (1x)
Biol. Unit 4:  R (1x),S (1x),T (1x),U (1x),V (1x),W (1x),X (1x),Y (1x),Z (1x),a (1x),b (1x),c (1x),d (1x),e (1x),f (1x),h (1x),i (1x)
Keywords :  Hydrogen-Bonding, The Four-Layer Aggregate, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Y. Li, B. A. Song, D. Y. Hu, X. Chen, Z. C. Wang, M. J. Zeng, D. D. Yu, Z. Chen, L. H. Jin, S. Yang
The Conformations And Interactions Of The Four-Layer Aggregate Revealed By X-Ray Crystallography Diffraction Implied The Importance Of Peptides At Opposite Ends In Thei Assemblies
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CAPSID PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, h, i
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A-N-HIS-TMV CP19
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PET28A
    Fragment: UNP RESIDUES 2-155
    Gene: CP
    Organism Common: TMV
    Organism Scientific: TOBACCO MOSAIC VIRUS
    Organism Taxid: 12243
    Strain: U1
    Synonym: COAT PROTEIN

 Structural Features

(-) Chains, Units

  12345678910111213141516171819202122232425262728293031323334
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefhi
Biological Unit 1 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)I (1x)J (1x)K (1x)L (1x)M (1x)N (1x)O (1x)P (1x)Q (1x)                 
Biological Unit 2 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)I (1x)J (1x)K (1x)L (1x)M (1x)N (1x)O (1x)P (1x)Q (1x)                 
Biological Unit 3 (1x):                  R (1x)S (1x)T (1x)U (1x)V (1x)W (1x)X (1x)Y (1x)Z (1x)a (1x)b (1x)c (1x)d (1x)e (1x)f (1x)h (1x)i (1x)
Biological Unit 4 (1x):                  R (1x)S (1x)T (1x)U (1x)V (1x)W (1x)X (1x)Y (1x)Z (1x)a (1x)b (1x)c (1x)d (1x)e (1x)f (1x)h (1x)i (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4GQH)

(-) Sites  (0, 0)

(no "Site" information available for 4GQH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GQH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GQH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GQH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GQH)

(-) Exons   (0, 0)

(no "Exon" information available for 4GQH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d4gqha_ A: Tobacco mosaic virus coat protein                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh A  -2 GSHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNTLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     7        17        27        37        47        57        67        77        87   ||  112       122       132       142       152  
                                                                                                                        91|                                               
                                                                                                                        107                                               


Chain B from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains d4gqhb_ B: Tobacco mosaic virus coat protein                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhh..eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh B  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   115       125       135       145         
                                                                                                                       91|                                             
                                                                                                                       109                                             


Chain C from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains d4gqhc_ C: Tobacco mosaic virus coat protein                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gqh C  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   110       120       130       140       150    
                                                                                                                       91|                                                  
                                                                                                                       104                                                  


Chain D from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains d4gqhd_ D: Tobacco mosaic virus coat protein                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh D  -2 GSHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRTLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     7        17        27        37        47        57        67        77        87    || 111       121       131       141       151   
                                                                                                                         92|                                               
                                                                                                                         107                                               


Chain E from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains d4gqhe_ E: Tobacco mosaic virus coat protein                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhh..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh E  -2 GSHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     7        17        27        37        47        57        67        77        87   ||  114       124       134       144       154
                                                                                                                        91|                                             
                                                                                                                        109                                             


Chain F from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains d4gqhf_ F: Tobacco mosaic virus coat protein                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...............eeee....hhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh F  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88   ||  111       121       131       141       151   
                                                                                                                        92|                                                
                                                                                                                        106                                                


Chain G from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains d4gqhg_ G: Tobacco mosaic virus coat protein                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh G  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIILDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88     ||111       121       131       141       151   
                                                                                                                          94|                                              
                                                                                                                          108                                              


Chain H from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains d4gqhh_ H: Tobacco mosaic virus coat protein                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee...hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...............eeee....hhhhhhhhhhhhh......hhhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeehhhhhhhhh..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gqh H  -2 GSHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     7        17        27        37        47        57        67        77        87    || 110       120       130       140       150    
                                                                                                                         92|                                                
                                                                                                                         106                                                


Chain I from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4gqhi_ I: Tobacco mosaic virus coat protein                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhh..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh I  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNTLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   113       123       133       143       153 
                                                                                                                       91|                                               
                                                                                                                       107                                               


Chain J from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains d4gqhj_ J: Tobacco mosaic virus coat protein                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhh....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh J  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88   ||  109       119       129       139       149     
                                                                                                                        92|                                                  
                                                                                                                        104                                                  


Chain K from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains d4gqhk_ K: Tobacco mosaic virus coat protein                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh K  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88   ||  111       121       131       141       151   
                                                                                                                        92|                                                
                                                                                                                        106                                                


Chain L from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4gqhl_ L: Tobacco mosaic virus coat protein                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh L  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNTLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   113       123       133       143       153 
                                                                                                                       91|                                               
                                                                                                                       107                                               


Chain M from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d4gqhm_ M: Tobacco mosaic virus coat protein                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh M  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRTLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88   ||  112       122       132       142       152  
                                                                                                                        92|                                               
                                                                                                                        107                                               


Chain N from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d4gqhn_ N: Tobacco mosaic virus coat protein                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh N  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRTLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88   ||  112       122       132       142       152  
                                                                                                                        92|                                               
                                                                                                                        107                                               


Chain O from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains d4gqho_ O: Tobacco mosaic virus coat protein                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..hhhhhhh....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhh..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh O  -2 GSHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     7        17        27        37        47        57        67        77        87   ||  114       124       134       144       154
                                                                                                                        91|                                             
                                                                                                                        109                                             


Chain P from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains d4gqhp_ P: Tobacco mosaic virus coat protein                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh P  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88   ||  107       117       127       137       147       
                                                                                                                        92|                                                    
                                                                                                                        102                                                    


Chain Q from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains d4gqhq_ Q: Tobacco mosaic virus coat protein                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...............eeee....hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh Q  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88   ||  108       118       128       138       148      
                                                                                                                        92|                                                   
                                                                                                                        103                                                   


Chain R from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains d4gqhr_ R: Tobacco mosaic virus coat protein                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh R  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88 ||    121       131       141       151   
                                                                                                                      90|                                        
                                                                                                                      114                                        


Chain S from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains d4gqhs_ S: Tobacco mosaic virus coat protein                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh S  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88 ||    121       131       141       151   
                                                                                                                      90|                                        
                                                                                                                      114                                        


Chain T from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains d4gqht_ T: Tobacco mosaic virus coat protein                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gqh T  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88 ||    122       132       142       152  
                                                                                                                      90|                                       
                                                                                                                      115                                       


Chain U from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains d4gqhu_ U: Tobacco mosaic virus coat protein                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh U  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88 ||    121       131       141       151   
                                                                                                                      90|                                        
                                                                                                                      114                                        


Chain V from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains d4gqhv_ V: Tobacco mosaic virus coat protein                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..eehhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh V  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   120       130       140       150    
                                                                                                                       91|                                        
                                                                                                                       114                                        


Chain W from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains d4gqhw_ W: Tobacco mosaic virus coat protein                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh W  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   120       130       140       150    
                                                                                                                       91|                                        
                                                                                                                       114                                        


Chain X from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains d4gqhx_ X: Tobacco mosaic virus coat protein                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...............eeee....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..eeehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh X  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88||     123       133       143       153 
                                                                                                                     89|                                       
                                                                                                                     115                                       


Chain Y from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains d4gqhy_ Y: Tobacco mosaic virus coat protein                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gqh Y  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88||     122       132       142       152  
                                                                                                                     89|                                        
                                                                                                                     114                                        


Chain Z from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains d4gqhz_ Z: Tobacco mosaic virus coat protein                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh Z  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   120       130       140       150    
                                                                                                                       91|                                        
                                                                                                                       114                                        


Chain a from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...............eeee.....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..eeehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh a   0 HSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     9        19        29        39        49        59        69        79        89|      123       133       143       153 
                                                                                                                    89|                                        
                                                                                                                    114                                        


Chain b from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee..hhhhhhh....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gqh b  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88||     122       132       142       152  
                                                                                                                     89|                                        
                                                                                                                     114                                        


Chain c from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...............eeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh...eeehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh c  -2 GSHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     7        17        27        37        47        57        67        77        87   ||  118       128       138       148      
                                                                                                                        91|                                         
                                                                                                                        113                                         


Chain d from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh d  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   120       130       140       150    
                                                                                                                       91|                                        
                                                                                                                       114                                        


Chain e from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...............eeee....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..eeehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh e  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   120       130       140       150    
                                                                                                                       91|                                        
                                                                                                                       114                                        


Chain f from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhh...eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh f  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   120       130       140       150    
                                                                                                                       91|                                        
                                                                                                                       114                                        


Chain h from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhhh.....hhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh h  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   120       130       140       150    
                                                                                                                       91|                                        
                                                                                                                       114                                        


Chain i from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhh..eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...............eeee....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eeehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqh i  -1 SHSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS 154
                                     8        18        28        38        48        58        68        78        88  ||   120       130       140       150    
                                                                                                                       91|                                        
                                                                                                                       114
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 26)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GQH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GQH)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4gqh)
 
  Sites
(no "Sites" information available for 4gqh)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4gqh)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4gqh
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CAPSD_TMV | P69687
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  CAPSD_TMV | P69687
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAPSD_TMV | P69687: 1ei7 2tmv 3j06 3kml 4udv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4GQH)