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(-) Description

Title :  CIRCULAR PERMUTANT OF THE TOBACCO MOSAIC VIRUS
 
Authors :  K. E. Duderstadt, M. T. Dedeo, M. B. Francis, J. M. Berger
Date :  10 Nov 09  (Deposition) - 16 Feb 10  (Release) - 16 Feb 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.01
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q  (2x)
Keywords :  Tobacco Mosaic Virus Coat Protein, Permutant, Tmv, Tmvp, Cptmvp, Acetylation, Capsid Protein, Virion, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. T. Dedeo, K. E. Duderstadt, J. M. Berger, M. B. Francis
Nanoscale Protein Assemblies From A Circular Permutant Of The Tobacco Mosaic Virus.
Nano Lett. V. 10 181 2010
PubMed-ID: 19924865  |  Reference-DOI: 10.1021/NL9032395

(-) Compounds

Molecule 1 - COAT PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-20B
    Expression System Strain: TUNER DE3PLYSS CELLS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CP
    Mutation: YES
    Organism Common: TMV
    Organism Scientific: TOBACCO MOSAIC VIRUS
    Organism Taxid: 12243
    Strain: U1

 Structural Features

(-) Chains, Units

  1234567891011121314151617
Asymmetric Unit : ABCDEFGHIJKLMNOPQ
Biological Unit 1 (2x): ABCDEFGHIJKLMNOPQ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3KML)

(-) Sites  (0, 0)

(no "Site" information available for 3KML)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KML)

(-) Cis Peptide Bonds  (17, 17)

Asymmetric Unit
No.Residues
1Pro A:58 -Ala A:59
2Pro B:58 -Ala B:59
3Pro C:58 -Ala C:59
4Pro D:58 -Ala D:59
5Pro E:58 -Ala E:59
6Pro F:58 -Ala F:59
7Pro G:58 -Ala G:59
8Pro H:58 -Ala H:59
9Pro I:58 -Ala I:59
10Pro J:58 -Ala J:59
11Pro K:58 -Ala K:59
12Pro L:58 -Ala L:59
13Pro M:58 -Ala M:59
14Pro N:58 -Ala N:59
15Pro O:58 -Ala O:59
16Pro P:58 -Ala P:59
17Pro Q:58 -Ala Q:59

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 34)

Asymmetric Unit (2, 34)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_CAPSD_TMV_001 *T29ICAPSD_TMV  ---  ---A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/QT90I
2UniProtVAR_CAPSD_TMV_002 *P79SCAPSD_TMV  ---  ---A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/QP140S
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 68)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_CAPSD_TMV_001 *T29ICAPSD_TMV  ---  ---A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/QT90I
2UniProtVAR_CAPSD_TMV_002 *P79SCAPSD_TMV  ---  ---A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/QP140S
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KML)

(-) Exons   (0, 0)

(no "Exon" information available for 3KML)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml A  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain B from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml B  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain C from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml C  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain D from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml D  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain E from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml E  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain F from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml F  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain G from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml G  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain H from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml H  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain I from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml I  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain J from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml J  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain K from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml K  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain L from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml L  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain M from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml M  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain N from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml N  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain O from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml O  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain P from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml P  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152 


Chain Q from PDB  Type:PROTEIN  Length:141
 aligned with CAPSD_TMV | P69687 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:141
                                                                             1                                                                                           
                                     -         -         -         -         1        11        21        31        41        51        61        71        81        91 
            CAPSD_TMV     - -------------------------------------------------MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN  92
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh.eee.......eee..hhhhhh.....eehhhhhhhhhhhhh.....hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------I-------------------------------------------------S------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kml Q  13 TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN 153
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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(-) SCOP Domains  (0, 0)

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(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q   (CAPSD_TMV | P69687)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0019029    helical viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAPSD_TMV | P69687: 1ei7 2tmv 3j06 4gqh 4udv

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