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(-) Description

Title :  STRUCTURE OF THE SUBSTRATE-FREE HMUO, HO FROM CORYNEBACTERIUM DIPHTHERIAE
 
Authors :  M. Unno, M. Ikeda-Saito
Date :  20 Aug 12  (Deposition) - 21 Aug 13  (Release) - 21 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Helix, Heme Degradation, Heme, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Unno, A. Ardevol, C. Rovira, M. Ikeda-Saito
Crystal Structure Of The Substrate-Free And The Product-Bound Forms Of Hmuo, A Heme Oxygenase From Corynebacterium Diphtheriae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEME OXYGENASE
    Chains: A
    EC Number: 1.14.99.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: CORYNEBACTERIUM DIPHTHERIAE
    Organism Taxid: 1717

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2NA2Ligand/IonSODIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:46 , TYR A:53 , ARG A:132 , PHE A:160 , PHE A:208 , HOH A:1101 , HOH A:1148 , HOH A:1196BINDING SITE FOR RESIDUE GOL A 1001
2AC2SOFTWAREARG A:112 , GLU A:115 , ILE A:116 , ASN A:119 , ASP A:121 , GLU A:196 , GOL A:1006BINDING SITE FOR RESIDUE GOL A 1002
3AC3SOFTWAREASN A:119 , LEU A:211 , GLY A:214 , LEU A:215 , HOH A:1204BINDING SITE FOR RESIDUE GOL A 1003
4AC4SOFTWAREMET A:29 , HIS A:205 , HOH A:1107 , HOH A:1148BINDING SITE FOR RESIDUE GOL A 1004
5AC5SOFTWAREGLY A:67 , PHE A:68 , ALA A:69 , LEU A:183 , GLU A:184BINDING SITE FOR RESIDUE GOL A 1005
6AC6SOFTWARETHR A:101 , ASN A:119 , ASP A:121 , GLY A:214 , LEU A:215 , GOL A:1002 , HOH A:1117 , HOH A:1165BINDING SITE FOR RESIDUE GOL A 1006
7AC7SOFTWAREHOH A:1205BINDING SITE FOR RESIDUE NA A 1007
8AC8SOFTWAREHIS A:20 , HOH A:1269BINDING SITE FOR RESIDUE NA A 1008

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GOH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GOH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GOH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GOH)

(-) Exons   (0, 0)

(no "Exon" information available for 4GOH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains d4goha_ A: Heme oxygenase HmuO                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.....hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4goh A   6 AGLAVELKQSTAQAHEKAEHSTFMSDLLKGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSRITASPAVIDYVNRLEEIRDNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLELSDEQREHLLKEATDAFVFNHQVFADLGKGL 215
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GOH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GOH)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4goh)
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q54AI1_CORDP | Q54AI1: 1wzd 2z68 3i8r 3moo 4gpc 4gpf 4gph

(-) Related Entries Specified in the PDB File

1iw0 1iw1 4gpc 4gpf 4gph