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(-) Description

Title :  CRYSTAL STRUCTURE OF PROSTAGLANDIN F SYNTHASE FROM TRYPANOSOMA CRUZI BOUND TO NADP
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  08 Aug 12  (Deposition) - 15 Aug 12  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Chagas Disease, Prostaglandin D2, Trypanosomiasis, Eukaryotic Pathogen, Parasite, Nadp+, Nadph, Rutin, Bimatoprost, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. O. Moen, J. W. Fairman, S. R. Barnes, A. Sullivan, S. Nakazawa-Hewitt, W. C. Van Voorhis, B. L. Staker, D. D. Lorimer, P. J. Myler, T. E. Edwards
Structures Of Prostaglandin F Synthase From The Protozoa Leishmania Major And Trypanosoma Cruzi With Nadp.
Acta Crystallogr F Struct V. 71 609 2015 Biol Commun
PubMed-ID: 25945716  |  Reference-DOI: 10.1107/S2053230X15006883

(-) Compounds

Molecule 1 - PROSTAGLANDIN F SYNTHASE
    Chains: A
    EC Number: 1.1.1.188
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAVA0421
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TC00.1047053511287.49
    Organism Scientific: TRYPANOSOMA CRUZI
    Organism Taxid: 353153
    Strain: CL BRENER

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:24 , TYR A:53 , HIS A:111 , TRP A:112 , NAP A:302 , HOH A:562BINDING SITE FOR RESIDUE ACT A 301
2AC2SOFTWAREGLY A:22 , VAL A:23 , TRP A:24 , ASP A:48 , TYR A:53 , HIS A:111 , TRP A:112 , SER A:140 , ASN A:141 , GLN A:162 , TRP A:188 , SER A:189 , PRO A:190 , LEU A:191 , GLY A:192 , SER A:193 , GLY A:194 , LEU A:200 , ALA A:217 , ILE A:232 , PRO A:233 , LYS A:234 , SER A:235 , THR A:236 , ARG A:240 , GLU A:243 , ASN A:244 , ACT A:301 , HOH A:405 , HOH A:471 , HOH A:588 , HOH A:598 , HOH A:602 , HOH A:637 , HOH A:658 , HOH A:684 , HOH A:757 , HOH A:762BINDING SITE FOR RESIDUE NAP A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GIE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GIE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GIE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GIE)

(-) Exons   (0, 0)

(no "Exon" information available for 4GIE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4giea_ A: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhh......eee.....eee...ee......hhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh.hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.......eeeee......hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..ee.....hhhhhhhhhh......hhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gie A  -6 AHHHHHHMNCNYNCVTLHNSVRMPQLGLGVWRAQDGAETANAVRWAIEAGYRHIDTAYIYSNERGVGQGIRESGVPREEVWVTTKVWNSDQGYEKTLAAFERSRELLGLEYIDLYLIHWPGKKKFVDTWKALEKLYEEKKVRAIGVSNFEPHHLTELFKSCKIRPMVNQVELHPLFQQRTLREFCKQHNIAITAWSPLGSGEEAGILKNHVLGEIAKKHNKSPAQVVIRWDIQHGIVTIPKSTNKGRIQENFNVWDFKLTEEEMRQIDELNEDKRIGADPDNFFPGGE 281
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GIE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GIE)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  4gie
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  1.1.1.188
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PGFS_TRYCC | Q4DJ07: 4fzi

(-) Related Entries Specified in the PDB File

4f40 APO STRUCTURE, L. MAJOR
4fzi APO STRUCTURE
4g5d NADP STRUCTURE, L. MAJOR RELATED ID: SSGCID-TRCRA.00019.A RELATED DB: TARGETTRACK