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(-) Description

Title :  CRYSTAL STRUCTURE OF PROSTAGLANDIN F SYNTHASE FROM TRYPANOSOMA CRUZI
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  06 Jul 12  (Deposition) - 18 Jul 12  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Prostaglandin D2, Trypanosomiasis, Eukaryotic Pathogen, Parasite, Nadp+, Nadph, Rutin, Bimatoprost, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. O. Moen, J. W. Fairman, S. R. Barnes, A. Sullivan, S. Nakazawa-Hewitt, W. C. Van Voorhis, B. L. Staker, D. D. Lorimer, P. J. Myler, T. E. Edwards
Structures Of Prostaglandin F Synthase From The Protozoa Leishmania Major And Trypanosoma Cruzi With Nadp.
Acta Crystallogr F Struct V. 71 609 2015 Biol Commun
PubMed-ID: 25945716  |  Reference-DOI: 10.1107/S2053230X15006883

(-) Compounds

Molecule 1 - PROSTAGLANDIN F SYNTHASE
    Chains: A, B
    EC Number: 1.1.1.188
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAVA0421
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TC00.1047053511287.49
    Organism Scientific: TRYPANOSOMA CRUZI
    Organism Taxid: 353153
    Strain: CL BRENER

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1GLU2Mod. Amino AcidGLUTAMIC ACID
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GLU1Mod. Amino AcidGLUTAMIC ACID
2SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GLU1Mod. Amino AcidGLUTAMIC ACID
2SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:24 , TYR A:53 , TRP A:80 , HIS A:111 , TRP A:112 , ASN A:141 , TRP A:188 , HOH A:450 , HOH A:451BINDING SITE FOR RESIDUE GLU A 301
2AC2SOFTWARETRP B:24 , TYR B:53 , TRP B:80 , HIS B:111 , TRP B:112 , SER B:140 , ASN B:141 , TRP B:188BINDING SITE FOR RESIDUE GLU B 301
3AC3SOFTWARESER B:189 , PRO B:190 , LEU B:191 , GLY B:192 , PRO B:233 , LYS B:234BINDING SITE FOR RESIDUE SO4 B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FZI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FZI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FZI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FZI)

(-) Exons   (0, 0)

(no "Exon" information available for 4FZI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4fzia_ A: automated matches                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.....eee...ee......hhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh.hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhh......eeeee......hhhhhhhhhhh..eeeee.............hhhhhhhhhhhh.hhhhhhhhhhhhh..ee.....hhhhhhhhhh......hhhhhhhhhh.........hhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fzi A   5 YNCVTLHNSVRMPQLGLGVWRAQDGAETANAVRWAIEAGYRHIDTAYIYSNERGVGQGIRESGVPREEVWVTTKVWNSDQGYEKTLAAFERSRELLGLEYIDLYLIHWPGKKKFVDTWKALEKLYEEKKVRAIGVSNFEPHHLTELFKSCKIRPMVNQVELHPLFQQRTLREFCKQHNIAITAWSPLGSGEEAGILKNHVLGEIAKKHNKSPAQVVIRWDIQHGIVTIPKSTNKGRIQENFNVWDFKLTEEEMRQIDELNEDKRIGADPDNFFPGGEE 301
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274      ||
                                                                                                                                                                                                                                                                                                              281|
                                                                                                                                                                                                                                                                                                               301


Chain B from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4fzib_ B: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.....eee...ee......hhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh.hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.......eeeee......hhhhhhhhhhh..eeeee........hhhhhhhhhhh..hhhhhhhhhhhhh..ee.....hhhhhhhhhh......hhhhhhhhhh.........hhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fzi B   5 YNCVTLHNSVRMPQLGLGVWRAQDGAETANAVRWAIEAGYRHIDTAYIYSNERGVGQGIRESGVPREEVWVTTKVWNSDQGYEKTLAAFERSRELLGLEYIDLYLIHWPGKKKFVDTWKALEKLYEEKKVRAIGVSNFEPHHLTELFKSCKIRPMVNQVELHPLFQQRTLREFCKQHNIAITAWSPLGSILKNHVLGEIAKKHNKSPAQVVIRWDIQHGIVTIPKSTNKGRIQENFNVWDFKLTEEEMRQIDELNEDKRIGADPDNFFPGGE 301
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       199       209       219       229       239       249       259       269       279||
                                                                                                                                                                                                                      193|                                                                              280|
                                                                                                                                                                                                                       199                                                                               301
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FZI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FZI)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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  1.1.1.188
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PGFS_TRYCC | Q4DJ07: 4gie

(-) Related Entries Specified in the PDB File

1vbj PROSTAGLANDIN F SYNTHASE FROM T. BRUCEI RELATED ID: SSGCID-TRCRA.00019.A RELATED DB: TARGETTRACK
4f40 PROSTAGLANDIN F SYNTHASE FROM L. MAJOR