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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROSTAGLANDIN F SYNTHASE FROM LEISHMANIA MAJOR FRIEDLIN BOUND TO NADPH
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  17 Jul 12  (Deposition) - 15 Aug 12  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. O. Moen, J. W. Fairman, S. R. Barnes, A. Sullivan, S. Nakazawa-Hewitt, W. C. Van Voorhis, B. L. Staker, D. D. Lorimer, P. J. Myler, T. E. Edwards
Structures Of Prostaglandin F Synthase From The Protozoa Leishmania Major And Trypanosoma Cruzi With Nadp.
Acta Crystallogr F Struct V. 71 609 2015 Biol Commun
PubMed-ID: 25945716  |  Reference-DOI: 10.1107/S2053230X15006883

(-) Compounds

Molecule 1 - PROSTAGLANDIN F2-ALPHA SYNTHASE/D-ARABINOSE DEHYDROGENASE
    Chains: A, B
    EC Number: 1.1.1.188
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PGFS, LMJF_31_2150
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 347515
    Strain: FRIEDLIN
    Synonym: PROSTAGLANDIN F SYNTHASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:23 , VAL A:24 , TRP A:25 , ASP A:49 , TYR A:54 , HIS A:112 , TRP A:113 , SER A:149 , ASN A:150 , GLN A:171 , TRP A:197 , SER A:198 , PRO A:199 , LEU A:200 , GLY A:201 , GLN A:202 , GLY A:203 , LEU A:206 , ILE A:238 , PRO A:239 , LYS A:240 , SER A:241 , VAL A:242 , HIS A:243 , ARG A:246 , GLU A:249 , ASN A:250 , HOH A:427 , HOH A:434 , HOH A:436 , HOH A:437 , HOH A:439 , HOH A:440 , HOH A:546 , HOH A:573BINDING SITE FOR RESIDUE NDP A 301
2AC2SOFTWAREGLY B:23 , VAL B:24 , TRP B:25 , ASP B:49 , TYR B:54 , LYS B:79 , HIS B:112 , SER B:149 , ASN B:150 , GLN B:171 , TRP B:197 , SER B:198 , PRO B:199 , LEU B:200 , GLY B:201 , GLN B:202 , GLY B:203 , LEU B:206 , ALA B:223 , ILE B:238 , PRO B:239 , LYS B:240 , SER B:241 , VAL B:242 , HIS B:243 , ARG B:246 , GLU B:249 , ASN B:250 , HOH B:437 , HOH B:440 , HOH B:441 , HOH B:564 , HOH B:568 , HOH B:586 , HOH B:599 , HOH B:632 , HOH B:786BINDING SITE FOR RESIDUE NDP B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G5D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G5D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G5D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G5D)

(-) Exons   (0, 0)

(no "Exon" information available for 4G5D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4g5da_ A: automated matches                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee.....eee...ee......hhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhh.hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.......eeeee......hhhhhhhhhhh..eeeee..hhhhh...hhhhhhhhhhh..hhhhhhhhhhhhh..ee.....hhhhhhhhhh......hhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g5d A   2 AGVDKAMVTLSNGVKMPQFGLGVWQSPAGEVTENAVKWALCAGYRHIDTAAIYKNEESVGAGLRASGVPREDVFITTKLWNTEQGYESTLAAFEESRQKLGVDYIDLYLIHWPRGKDILSKEGKKYLDSWRAFEQLYKEKKVRAIGVSNFHIHHLEDVLAMCTVTPMVNQVELHPLNNQADLRAFCDAKQIKVEAWSPLGQGKLLSNPILSAIGAKYNKTAAQVILRWNIQKNLITIPKSVHRERIEENADIFDFELGAEDVMSIDALNTNSRYGPDPDEAQF 284
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   


Chain B from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4g5db_ B: automated matches                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee.....eee...ee......hhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhh..hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.......eeeee......hhhhhhhhhhh..eeeee..hhhhh...hhhhhhhhhhh..hhhhhhhhhhhhh..ee.....hhhhhhhhhh......hhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4g5d B   3 GVDKAMVTLSNGVKMPQFGLGVWQSPAGEVTENAVKWALCAGYRHIDTAAIYKNEESVGAGLRASGVPREDVFITTKLWNTEQGYESTLAAFEESRQKLGVDYIDLYLIHWPRGKDILSKEGKKYLDSWRAFEQLYKEKKVRAIGVSNFHIHHLEDVLAMCTVTPMVNQVELHPLNNQADLRAFCDAKQIKVEAWSPLGQGKLLSNPILSAIGAKYNKTAAQVILRWNIQKNLITIPKSVHRERIEENADIFDFELGAEDVMSIDALNTNSRYGPDPDEAQF 284
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G5D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G5D)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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  1.1.1.188
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PGFS_LEIMA | P22045: 4f40

(-) Related Entries Specified in the PDB File

4f40 LEISHMANIA MAJOR FRIEDLIN PROSTAGLANDIN F SYNTHASE, APO VERSION RELATED ID: SSGCID-LEMAA.00019.A RELATED DB: TARGETTRACK