4G51 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF NITRIC OXIDE WITH HEMOGLOBIN FROM TREMATOMUS BERNACCHII IN THE T QUATERNARY STRUCTURE (FULLY LIGATED STATE).

Authors :   A. Merlino, A. Balsamo, A. Pica, L. Mazzarella, A. Vergara

Date :   17 Jul 12 (Deposition) - 16 Jan 13 (Release) - 16 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   All Alpha Proteins, Oxygen Transporter, N-Terminal Acetylated Serine, Oxygen Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Merlino, M. R. Fuchs, A. Pica, A. Balsamo, F. S. Dworkowski, G. Pompidor, L. Mazzarella, A. Vergara
Selective X-Ray-Induced No Photodissociation In Haemoglobin Crystals: Evidence From A Raman-Assisted Crystallographic Study.
Acta Crystallogr. , Sect. D V. 69 137 2013
PubMed-ID: 23275172 | Reference-DOI: 10.1107/S0907444912042229

Molecule 1 - HEMOGLOBIN SUBUNIT ALPHA
	Chains	:	A, C
	Organism Common	:	ROCKCOD
	Organism Scientific	:	TREMATOMUS BERNACCHII
	Organism Taxid	:	40690
	Synonym	:	ALPHA-GLOBIN, HEMOGLOBIN ALPHA CHAIN

Molecule 2 - HEMOGLOBIN SUBUNIT BETA
	Chains	:	B, D
	Organism Common	:	ROCKCOD
	Organism Scientific	:	TREMATOMUS BERNACCHII
	Organism Taxid	:	40690
	Synonym	:	BETA-GLOBIN, HEMOGLOBIN BETA CHAIN

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 10)

No.	Name	Count	Type	Full Name
1	ACE	2	Mod. Amino Acid	ACETYL GROUP
2	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	NO	4	Ligand/Ion	NITRIC OXIDE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:59 , VAL A:63 , HEM A:202	BINDING SITE FOR RESIDUE NO A 201
2	AC2	SOFTWARE	MET A:32 , TYR A:42 , PHE A:43 , HIS A:45 , TRP A:46 , HIS A:59 , LYS A:62 , VAL A:63 , LEU A:84 , HIS A:88 , ASN A:98 , LEU A:102 , NO A:201	BINDING SITE FOR RESIDUE HEM A 202
3	AC3	SOFTWARE	HIS B:63 , VAL B:67 , HEM B:202	BINDING SITE FOR RESIDUE NO B 201
4	AC4	SOFTWARE	HIS B:41 , PHE B:42 , HIS B:63 , VAL B:67 , LEU B:71 , LEU B:91 , HIS B:92 , LEU B:96 , VAL B:98 , ASN B:102 , PHE B:103 , LEU B:141 , NO B:201	BINDING SITE FOR RESIDUE HEM B 202
5	AC5	SOFTWARE	VAL C:63 , LEU C:102 , HEM C:202	BINDING SITE FOR RESIDUE NO C 201
6	AC6	SOFTWARE	TYR C:42 , PHE C:43 , TRP C:46 , HIS C:59 , LYS C:62 , VAL C:63 , LEU C:84 , GLN C:87 , HIS C:88 , LEU C:92 , VAL C:94 , ASN C:98 , PHE C:99 , LEU C:102 , NO C:201	BINDING SITE FOR RESIDUE HEM C 202
7	AC7	SOFTWARE	HIS D:63 , VAL D:67 , HEM D:202	BINDING SITE FOR RESIDUE NO D 201
8	AC8	SOFTWARE	THR D:38 , PHE D:42 , HIS D:63 , LYS D:66 , VAL D:67 , HIS D:92 , LEU D:96 , VAL D:98 , ASN D:102 , PHE D:103 , NO D:201	BINDING SITE FOR RESIDUE HEM D 202

(no "SS Bond" information available for 4G51)

(no "Cis Peptide Bond" information available for 4G51)

(no "SAP(SNP)/Variant" information available for 4G51)

(no "PROSITE Motif" information available for 4G51)

(no "Exon" information available for 4G51)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains d4g51a_ A: Hemoglobin, alpha-chain                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g51 A   0 xSLSDKDKAAVRALWSKIGKSADAIGNDALSRMIVVYPQTKTYFSHWPDVTPGSPHIKAHGKKVMGGIALAVSKIDDLKTGLMELSEQHAYKLRVDPANFKILNHCILVVISTMFPKEFTPEAHVSLDKFLSGVALALAERYR 142
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139   
                            |                                                                                                                                              
                            0-ACE

Chain B from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains d4g51b_ B: Hemoglobin, beta-chain                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh......hhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g51 B   1 VEWTDKERSIISDIFSHMDYDDIGPKALSRCLIVYPWTQRHFSGFGNLYNAEAIIGNANVAAHGIKVLHGLDRGVKNMDNIAATYADLSTLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAVVVSALGKQYH 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain C from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains d4g51c_ C: Hemoglobin, alpha-chain                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhh..........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g51 C   0 xSLSDKDKAAVRALWSKIGKSADAIGNDALSRMIVVYPQTKTYFSHWPDVTPGSPHIKAHGKKVMGGIALAVSKIDDLKTGLMELSEQHAYKLRVDPANFKILNHCILVVISTMFPKEFTPEAHVSLDKFLSGVALALAERYR 142
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139   
                            0-ACE

Chain D from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains d4g51d_ D: Hemoglobin, beta-chain                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g51 D   1 VEWTDKERSIISDIFSHMDYDDIGPKALSRCLIVYPWTQRHFSGFGNLYNAEAIIGNANVAAHGIKVLHGLDRGVKNMDNIAATYADLSTLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAVVVSALGKQYH 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: All alpha proteins (14657)

Fold: Globin-like (1351)

Superfamily: Globin-like (1308)

Family: Globins (1157)

Protein domain: Hemoglobin, alpha-chain (292)

Emerald rockcod (Pagothenia bernacchii) [TaxId: 40690] (11)

1a	d4g51a_	A:
1b	d4g51c_	C:

Protein domain: Hemoglobin, beta-chain (292)

Emerald rockcod (Pagothenia bernacchii) [TaxId: 40690] (11)

2a	d4g51b_	B:
2b	d4g51d_	D:

(no "CATH Domain" information available for 4G51)

(no "Pfam Domain" information available for 4G51)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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(no "Cis Peptide Bonds" information available for 4g51)

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(no "Related Entries Specified in the PDB File" available for 4G51)

Description

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Ligands, Modified Residues, Ions (3, 10)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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