4G4J - JenaLib

Title :   CRYSTAL STRUCTURE OF GLUCURONOYL ESTERASE S213A MUTANT FROM SPOROTRICHUM THERMOPHILE IN COMPLEX WITH METHYL 4-O-METHYL-BETA-D-GLUCOPYRANURONATE DETERMINED AT 2.35 A RESOLUTION

Authors :   M. D. Charavgi, M. Dimarogona, E. Topakas, P. Christakopoulos, E. D. Ch

Date :   16 Jul 12 (Deposition) - 02 Jan 13 (Release) - 23 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.35

Chains :   Asym./Biol. Unit : A

Keywords :   Alpha/Beta Hydrolase, 3-Layer Alpha/Beta/Alpha Sandwich, Rossmann Fold, Carbohydrate Binding, Glucuronoyl Esterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. D. Charavgi, M. Dimarogona, E. Topakas, P. Christakopoulos, E. D. Chrysina
The Structure Of A Novel Glucuronoyl Esterase From Myceliophthora Thermophila Gives New Insights Into Its Role As A Potential Biocatalyst.
Acta Crystallogr. , Sect. D V. 69 63 2013
PubMed-ID: 23275164 | Reference-DOI: 10.1107/S0907444912042400

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 23)

Sites (23, 23)

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ALA A:213 , ARG A:214 , LYS A:217 , GLN A:259 , GLU A:267 , TRP A:310 , LEU A:311 , HIS A:346 , HOH A:793	BINDING SITE FOR RESIDUE MCU A 501
02	AC2	SOFTWARE	VAL A:332 , PRO A:333 , ASN A:334 , ASN A:335 , HOH A:735 , HOH A:744	BINDING SITE FOR RESIDUE EDO A 502
03	AC3	SOFTWARE	ASP A:47 , LYS A:56 , TRP A:389 , GLY A:392 , ALA A:393 , EDO A:513	BINDING SITE FOR RESIDUE EDO A 503
04	AC4	SOFTWARE	ARG A:67 , ALA A:224 , LEU A:225 , ASP A:227 , LEU A:295 , ARG A:299 , HOH A:699 , HOH A:798	BINDING SITE FOR RESIDUE EDO A 504
05	AC5	SOFTWARE	ARG A:246 , ASP A:249 , GLN A:250 , ILE A:282 , THR A:283 , HOH A:620 , HOH A:649 , HOH A:749	BINDING SITE FOR RESIDUE EDO A 505
06	AC6	SOFTWARE	GLN A:250 , VAL A:381 , ASN A:382 , TRP A:386	BINDING SITE FOR RESIDUE EDO A 506
07	AC7	SOFTWARE	PHE A:111 , SER A:112 , ALA A:113 , PHE A:146 , ASN A:147 , GLU A:150	BINDING SITE FOR RESIDUE EDO A 507
08	AC8	SOFTWARE	PRO A:138 , ASN A:140 , ASN A:307 , GLY A:342 , GLY A:343 , ASN A:362 , LEU A:366 , ASP A:378	BINDING SITE FOR RESIDUE EDO A 508
09	AC9	SOFTWARE	PRO A:138 , VAL A:141 , THR A:143	BINDING SITE FOR RESIDUE EDO A 509
10	BC1	SOFTWARE	ASN A:41 , ALA A:43 , HOH A:757	BINDING SITE FOR RESIDUE EDO A 510
11	BC2	SOFTWARE	ASN A:140 , GOL A:523 , HOH A:723	BINDING SITE FOR RESIDUE EDO A 511
12	BC3	SOFTWARE	GLU A:90 , SER A:108 , ILE A:109 , SER A:110 , HOH A:779	BINDING SITE FOR RESIDUE EDO A 512
13	BC4	SOFTWARE	ASP A:47 , THR A:50 , LYS A:56 , ASP A:87 , EDO A:503	BINDING SITE FOR RESIDUE EDO A 513
14	BC5	SOFTWARE	VAL A:40 , ASN A:41 , SER A:42 , PRO A:85 , HOH A:804	BINDING SITE FOR RESIDUE EDO A 514
15	BC6	SOFTWARE	ASN A:307 , ASN A:358 , VAL A:379 , EDO A:517 , HOH A:611 , HOH A:619	BINDING SITE FOR RESIDUE EDO A 515
16	BC7	SOFTWARE	ARG A:160 , ILE A:265 , ASN A:268 , PRO A:269 , TRP A:270 , PHE A:271 , SER A:272 , ASP A:276	BINDING SITE FOR RESIDUE EDO A 516
17	BC8	SOFTWARE	ASN A:307 , ASP A:309 , PRO A:313 , ASN A:354 , GLN A:355 , ASN A:358 , EDO A:515	BINDING SITE FOR RESIDUE EDO A 517
18	BC9	SOFTWARE	ALA A:52 , SER A:53 , GLY A:54 , PRO A:85 , PRO A:86 , ARG A:187 , ASP A:190 , EDO A:519	BINDING SITE FOR RESIDUE EDO A 518
19	CC1	SOFTWARE	PRO A:38 , VAL A:40 , ALA A:52 , PRO A:85 , PRO A:286 , EDO A:518	BINDING SITE FOR RESIDUE EDO A 519
20	CC2	SOFTWARE	ASP A:203	BINDING SITE FOR RESIDUE EDO A 520
21	CC3	SOFTWARE	LYS A:44 , GLU A:385 , TRP A:386 , HOH A:763	BINDING SITE FOR RESIDUE EDO A 521
22	CC4	SOFTWARE	ASP A:249 , LYS A:252 , ALA A:253	BINDING SITE FOR RESIDUE GOL A 522
23	CC5	SOFTWARE	ASN A:140 , ALA A:253 , GLY A:255 , LEU A:366 , EDO A:511 , HOH A:712	BINDING SITE FOR RESIDUE GOL A 523

SS Bonds (3, 3)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............................hhhhhhhhhhhhhhhhhhhh.........eeeeeee..eeeeeeee..eeeeeeeeee.......eeeeeee...........eeeeehhhhhh...hhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeehhhhhhhhhhhhhh....eeeee........hhhhhhhhhhh.....hhhhhh.........hhhhh.hhhhh..hhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhhhhhhh.........ee.....hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g4j A  29 DTCSVSDNYPTVNSAKLPDPFTTASGEKVTTKDQFECRRAEINKILQQYELGEYPGPPDSVEASLSGNSITVRVTVGSKSISFSASIRKPSGAGPFPAIIGIGGASIPIPSNVATITFNNDEFGAQMGSGSRGQGKFYDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCARNGKGAFITGALVDRIALTIPQESGAGGAACWRISDQQKAAGANIQTAAQIITENPWFSRNFDPHVNSITSVPQDHHLLAALIVPRGLAVFENNIDWLGPVSTTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQFPSSQNQDLNSYINYFLLGQGSPSGVEHSDVNVNVAEWAPWGAGAPTLA 397
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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	Cis Peptide Bonds
		Gly A:122 - Pro A:123	[ RasMol ]
		Val A:297 - Pro A:298	[ RasMol ]

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