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(-) Description

Title :  CRYSTAL STRUCTURE OF RECOMBINANT GLUCURONOYL ESTERASE FROM SPOROTRICHUM THERMOPHILE DETERMINED AT 1.55 A RESOLUTION
 
Authors :  M. D. Charavgi, M. Dimarogona, E. Topakas, P. Christakopoulos, E. D. Ch
Date :  16 Jul 12  (Deposition) - 02 Jan 13  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha/Beta Hydrolase, 3-Layer Alpha/Beta/Alpha Sandwich, Rossmann Fold, Glucuronoyl Esterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Charavgi, M. Dimarogona, E. Topakas, P. Christakopoulos, E. D. Chrysina
The Structure Of A Novel Glucuronoyl Esterase From Myceliophthora Thermophila Gives New Insights Into Its Role As A Potential Biocatalyst.
Acta Crystallogr. , Sect. D V. 69 63 2013
PubMed-ID: 23275164  |  Reference-DOI: 10.1107/S0907444912042400

(-) Compounds

Molecule 1 - 4-O-METHYL-GLUCURONOYL METHYLESTERASE
    Chains: A
    EC Number: 3.1.1.-
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS
    Expression System Plasmid: PPICZALPHAC
    Expression System Strain: X-33
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Gene: MYCTH_55568
    Organism Scientific: MYCELIOPHTHORA THERMOPHILA
    Organism Taxid: 573729
    Strain: ATCC 42464

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric/Biological Unit (2, 16)
No.NameCountTypeFull Name
1EDO14Ligand/Ion1,2-ETHANEDIOL
2GOL2Ligand/IonGLYCEROL

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:36 , TYR A:37 , THR A:39 , GLU A:55 , GLN A:62 , GLN A:76 , TYR A:77 , HOH A:772 , HOH A:975 , HOH A:1006BINDING SITE FOR RESIDUE EDO A 501
02AC2SOFTWAREARG A:171 , TYR A:363 , PHE A:364 , HOH A:704 , HOH A:705 , HOH A:848BINDING SITE FOR RESIDUE EDO A 502
03AC3SOFTWAREASP A:35 , LYS A:56 , HOH A:1012BINDING SITE FOR RESIDUE EDO A 503
04AC4SOFTWAREASP A:47 , LYS A:56 , TRP A:389 , GLY A:392 , HOH A:607 , HOH A:960BINDING SITE FOR RESIDUE EDO A 504
05AC5SOFTWARELYS A:328 , HOH A:719 , HOH A:798 , HOH A:890BINDING SITE FOR RESIDUE EDO A 505
06AC6SOFTWARELYS A:60 , ASP A:172 , ARG A:273BINDING SITE FOR RESIDUE EDO A 506
07AC7SOFTWAREARG A:273 , PRO A:277BINDING SITE FOR RESIDUE EDO A 507
08AC8SOFTWAREHOH A:717 , HOH A:853BINDING SITE FOR RESIDUE EDO A 508
09AC9SOFTWARETHR A:266 , HOH A:846 , HOH A:890 , HOH A:963BINDING SITE FOR RESIDUE EDO A 509
10BC1SOFTWAREGLU A:375 , GOL A:516 , HOH A:713 , HOH A:976BINDING SITE FOR RESIDUE EDO A 510
11BC2SOFTWAREMET A:155BINDING SITE FOR RESIDUE EDO A 511
12BC3SOFTWARESER A:339 , SER A:352 , GLN A:353 , ASP A:356 , HOH A:913BINDING SITE FOR RESIDUE EDO A 512
13BC4SOFTWAREGOL A:515BINDING SITE FOR RESIDUE EDO A 513
14BC5SOFTWARETHR A:51 , HOH A:625 , HOH A:917BINDING SITE FOR RESIDUE EDO A 514
15BC6SOFTWAREASP A:167 , EDO A:513 , HOH A:793BINDING SITE FOR RESIDUE GOL A 515
16BC7SOFTWARETHR A:317 , VAL A:379 , ASN A:380 , VAL A:381 , EDO A:510 , HOH A:737BINDING SITE FOR RESIDUE GOL A 516

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:31 -A:65
2A:212 -A:347
3A:244 -A:319

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:122 -Pro A:123
2Val A:297 -Pro A:298

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G4G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G4G)

(-) Exons   (0, 0)

(no "Exon" information available for 4G4G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhhhhhhhhh.........eeeeee...eeeeeeee..eeeeeeeeee.......eeeeeee...........eeeeehhhhhh...hhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeehhhhhhhhhhhhhh....eeeee........hhhhhhhhhhh.....hhhhhh.........hhhhh.hhhhh..hhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhhhhhhh.........eee....hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g4g A  31 CSVSDNYPTVNSAKLPDPFTTASGEKVTTKDQFECRRAEINKILQQYELGEYPGPPDSVEASLSGNSITVRVTVGSKSISFSASIRKPSGAGPFPAIIGIGGASIPIPSNVATITFNNDEFGAQMGSGSRGQGKFYDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALVDRIALTIPQESGAGGAACWRISDQQKAAGANIQTAAQIITENPWFSRNFDPHVNSITSVPQDHHLLAALIVPRGLAVFENNIDWLGPVSTTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQFPSSQNQDLNSYINYFLLGQGSPSGVEHSDVNVNVAEWAPWGAGAPTLA 397
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G4G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G4G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G4G)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        GCE2_MYCTT | G2QJR6: 4g4i 4g4j

(-) Related Entries Specified in the PDB File

4g4i 4g4j