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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUCURONOYL ESTERASE S213A MUTANT FROM SPOROTRICHUM THERMOPHILE DETERMINED AT 1.9 A RESOLUTION
 
Authors :  M. D. Charvagi, M. Dimarogona, E. Topakas, P. Christakopoulos, E. D. Ch
Date :  16 Jul 12  (Deposition) - 02 Jan 13  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha/Beta Hydrolase, 3-Layer Alpha/Beta/Alpha Sandwich, Rossmann Fold, Glucuronoyl Esterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Charavgi, M. Dimarogona, E. Topakas, P. Christakopoulos, E. D. Chrysina
The Structure Of A Novel Glucuronoyl Esterase From Myceliophthora Thermophila Gives New Insights Into Its Role As A Potential Biocatalyst.
Acta Crystallogr. , Sect. D V. 69 63 2013
PubMed-ID: 23275164  |  Reference-DOI: 10.1107/S0907444912042400

(-) Compounds

Molecule 1 - 4-O-METHYL-GLUCURONOYL METHYLESTERASE
    Chains: A
    EC Number: 3.1.1.-
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS
    Expression System Plasmid: PPICZALPHAC
    Expression System Strain: X-33
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Gene: MYCTH_55568
    Mutation: YES
    Organism Scientific: MYCELIOPHTHORA THERMOPHILA
    Organism Taxid: 573729
    Strain: ATCC 42464

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2GOL3Ligand/IonGLYCEROL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:56 , ASP A:87 , GOL A:510 , HOH A:881 , HOH A:969BINDING SITE FOR RESIDUE EDO A 501
02AC2SOFTWAREGLU A:90 , ALA A:91 , SER A:92 , THR A:99 , ARG A:101 , SER A:110 , HOH A:882BINDING SITE FOR RESIDUE EDO A 502
03AC3SOFTWARELYS A:107 , ASP A:167 , LEU A:168 , GLY A:170BINDING SITE FOR RESIDUE EDO A 503
04AC4SOFTWARELYS A:328 , ALA A:329 , ALA A:393 , PRO A:394 , THR A:395 , HOH A:799BINDING SITE FOR RESIDUE EDO A 504
05AC5SOFTWARECYS A:31 , VAL A:33 , ALA A:68 , PRO A:277 , HOH A:708 , HOH A:734 , HOH A:971BINDING SITE FOR RESIDUE EDO A 505
06AC6SOFTWAREARG A:214BINDING SITE FOR RESIDUE EDO A 506
07AC7SOFTWARELYS A:44 , GLU A:385 , TRP A:386 , HOH A:972 , HOH A:1032BINDING SITE FOR RESIDUE EDO A 507
08AC8SOFTWARELYS A:217 , GLN A:259 , GLU A:267 , TRP A:310BINDING SITE FOR RESIDUE EDO A 508
09AC9SOFTWARESER A:32 , THR A:51 , SER A:53 , GLU A:55 , GLU A:193 , HOH A:625 , HOH A:704BINDING SITE FOR RESIDUE GOL A 509
10BC1SOFTWAREASP A:47 , PHE A:49 , THR A:50 , LYS A:56 , TRP A:389 , GLY A:392 , EDO A:501 , HOH A:626 , HOH A:649 , HOH A:883 , HOH A:969BINDING SITE FOR RESIDUE GOL A 510
11BC2SOFTWAREARG A:116 , ILE A:137 , PRO A:138 , VAL A:141 , ALA A:142 , THR A:143BINDING SITE FOR RESIDUE GOL A 511

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:31 -A:65
2A:212 -A:347
3A:244 -A:319

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:122 -Pro A:123
2Val A:297 -Pro A:298

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G4I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G4I)

(-) Exons   (0, 0)

(no "Exon" information available for 4G4I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............................hhhhhhhhhhhhhhhhhhhh.........eeeeeee..eeeeeeee..eeeeeeeeee.......eeeeeee...........eeeee.........hhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeehhhhhhhhhhhhhh....eeeee........hhhhhhhhhhh.....hhhhhh......hhhhhhhh.hhhhh..hhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhhhhhhh.........ee.....hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g4i A  29 DTCSVSDNYPTVNSAKLPDPFTTASGEKVTTKDQFECRRAEINKILQQYELGEYPGPPDSVEASLSGNSITVRVTVGSKSISFSASIRKPSGAGPFPAIIGIGGASIPIPSNVATITFNNDEFGAQMGSGSRGQGKFYDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCARNGKGAFITGALVDRIALTIPQESGAGGAACWRISDQQKAAGANIQTAAQIITENPWFSRNFDPHVNSITSVPQDHHLLAALIVPRGLAVFENNIDWLGPVSTTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQFPSSQNQDLNSYINYFLLGQGSPSGVEHSDVNVNVAEWAPWGAGAPTLA 397
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G4I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G4I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G4I)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

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UniProtKB/Swiss-Prot
        GCE2_MYCTT | G2QJR6: 4g4g 4g4j

(-) Related Entries Specified in the PDB File

4g4g CRYSTAL STRUCTURE OF RECOMBINANT GLUCURONOYL ESTERASE FROM SPOROTRICHUM THERMOPHILE DETERMINED AT 1.55 A RESOLUTION
4g4j