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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX OF THE 3-MBT REPEAT DOMAIN OF L3MBTL3 AND UNC1215
 
Authors :  N. Zhong, W. Tempel, M. Ravichandran, A. Dong, L. A. Ingerman, S. Graslu S. V. Frye, C. Bountra, C. H. Arrowsmith, A. M. Edwards, P. J. Brown, Str Genomics Consortium (Sgc)
Date :  14 Jun 12  (Deposition) - 27 Jun 12  (Release) - 27 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics Consortium, Sgc, Chromatin Modification, Transcription Repression, Mbt Repeat, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Zhong, W. Tempel, M. Ravichandran, A. Dong, L. A. Ingerman, S. Graslund, S. V. Frye, C. Bountra, C. H. Arrowsmith, A. M. Edwards, P. J. Brown
Crystal Structure Of The Complex Of The 3-Mbt Repeat Domain Of L3Mbtl3 And Unc1215
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE PROTEIN 3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC-CH
    Expression System Strain: BL21-V2R-PRARE2
    Expression System Taxid: 562
    Gene: KIAA1798, L3MBTL3, MBT1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: H-L(3)MBT-LIKE PROTEIN 3, L(3)MBT-LIKE PROTEIN 3, MBT-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 31)

Asymmetric/Biological Unit (2, 31)
No.NameCountTypeFull Name
1UNX29Ligand/IonUNKNOWN ATOM OR ION
2UWN2Ligand/Ion[2-(PHENYLAMINO)BENZENE-1,4-DIYL]BIS{[4-(PYRROLIDIN-1-YL)PIPERIDIN-1-YL]METHANONE}

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:381 , ASN A:384 , PHE A:387 , CYS A:389 , PHE A:405 , TRP A:408 , TYR A:412 , ASP B:274 , HIS B:277 , PHE B:298 , TYR B:301 , TYR B:305 , HIS B:330 , ASP B:409 , GLU B:410 , SER B:411BINDING SITE FOR RESIDUE UWN A 1001
2AC2SOFTWAREASP A:274 , HIS A:277 , PHE A:298 , TYR A:301 , TYR A:305 , HIS A:330 , ASP A:409 , GLU A:410 , SER A:411 , ASP B:381 , ASN B:384 , PHE B:387 , CYS B:389 , PHE B:405 , TRP B:408 , TYR B:412BINDING SITE FOR RESIDUE UWN A 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FL6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FL6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FL6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FL6)

(-) Exons   (0, 0)

(no "Exon" information available for 4FL6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4fl6a1 A:231-339 automated matches                                                                          d4fl6a2 A:340-447 automated matches                                                                    d4fl6a3 A:448-544 automated matches                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh....hhhhh.................eeeeee..eeeeeeeeeeeeee..eeeeee...hhhhheeee.....ee..hhhhhhh.........hhhhhhhhhhhhhh.....hhhhh...........eeeeee..eeeeeeeeeeeeee..eeeeee...hhhhheeee.....ee..hhhhhh...ee...........hhhhhhhhh.....hhhhh............eeeee.......eeeeeeeee...eeeeee........eeee.....ee..hhhhhhh..ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fl6 A 231 AWCWASYLEEEKAVAVPAKLFKEHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFEVIPSGFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKVKPPHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPL 544
                                   240       250       260       270       280       290       300       310       320       330       340       350       360|      375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535         
                                                                                                                                                           360|                                                                                                                                                                                  
                                                                                                                                                            366                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4fl6b1 B:231-339 automated matches                                                                          d4fl6b2 B:340-447 automated matches                                                                 d4fl6b3 B:448-544 automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhh.....hhhhh.................eeeeee..eeeeeeeeeeeeee..eeeeee...hhhhheeee.....ee..hhhhhh...ee.....hhhhhhhhhhhhhh.....hhhhhh........eeeeee..eeeeeeeeeeeeee..eeeeee...hhhhheee......ee..hhhhhh...ee..........hhhhhhhhh......................eeeee.......eeeeeeeee...eeeeee........eeee.....ee..hhhhhhh..ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fl6 B 231 AWCWASYLEEEKAVAVPAKLFKEHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENSGFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVHFSWDKYLEETNSLPAPARAFKVKPPHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPL 544
                                   240       250       260       270       280       290       300       310       320       330       340       350       360||     377       387       397       407       417       427       437       448       458       468       478       488       498       508       518       528       538      
                                                                                                                                                            361|                                                                         445|                                                                                                 
                                                                                                                                                             369                                                                          447
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FL6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FL6)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  LMBL3_HUMAN | Q96JM7
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 Related Entries

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UniProtKB/Swiss-Prot
        LMBL3_HUMAN | Q96JM7: 1wjq 1wjs 3ut1 4l59

(-) Related Entries Specified in the PDB File

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