4FAU - JenaLib

Title :   STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN THE PRESENCE OF LI+, MG2+ AND 5'-EXON

Authors :   M. Marcia, A. M. Pyle

Date :   22 May 12 (Deposition) - 14 Nov 12 (Release) - 14 Nov 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.87

Chains :   Asym./Biol. Unit : A

Keywords :   Ribozyme, Self-Splicing, Retrotransposition, Spliceosome, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Marcia, A. M. Pyle
Visualizing Group Ii Intron Catalysis Through The Stages Of Splicing.
Cell(Cambridge, Mass. ) V. 151 497 2012
PubMed-ID: 23101623 | Reference-DOI: 10.1016/J.CELL.2012.09.033

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 28)

Sites (25, 25)

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	A A:184	BINDING SITE FOR RESIDUE MG A 401
02	AC2	SOFTWARE	U A:4	BINDING SITE FOR RESIDUE MG A 402
03	AC3	SOFTWARE	A A:154 , G A:155	BINDING SITE FOR RESIDUE MG A 403
04	AC4	SOFTWARE	G A:324 , G A:325	BINDING SITE FOR RESIDUE MG A 404
05	AC5	SOFTWARE	A A:120 , A A:121 , HOH A:528	BINDING SITE FOR RESIDUE MG A 405
06	AC6	SOFTWARE	U A:59 , HOH A:513	BINDING SITE FOR RESIDUE MG A 406
07	AC7	SOFTWARE	C A:286 , A A:287 , G A:288	BINDING SITE FOR RESIDUE MG A 407
08	AC8	SOFTWARE	G A:107 , HOH A:530 , HOH A:531 , HOH A:532	BINDING SITE FOR RESIDUE MG A 408
09	AC9	SOFTWARE	C A:372 , HOH A:533 , HOH A:534	BINDING SITE FOR RESIDUE MG A 410
10	BC1	SOFTWARE	C A:119 , A A:174 , G A:239 , HOH A:525 , HOH A:526 , HOH A:527	BINDING SITE FOR RESIDUE MG A 411
11	BC2	SOFTWARE	U A:66 , A A:67	BINDING SITE FOR RESIDUE MG A 412
12	BC3	SOFTWARE	G A:284	BINDING SITE FOR RESIDUE MG A 413
13	BC4	SOFTWARE	A A:186	BINDING SITE FOR RESIDUE MG A 415
14	BC5	SOFTWARE	C A:6 , HOH A:539	BINDING SITE FOR RESIDUE MG A 416
15	BC6	SOFTWARE	G A:169	BINDING SITE FOR RESIDUE MG A 417
16	BC7	SOFTWARE	A A:67 , G A:68 , HOH A:505 , HOH A:536	BINDING SITE FOR RESIDUE MG A 418
17	BC8	SOFTWARE	U A:285	BINDING SITE FOR RESIDUE MG A 419
18	BC9	SOFTWARE	A A:77 , A A:105 , G A:111	BINDING SITE FOR RESIDUE MG A 421
19	CC1	SOFTWARE	A A:283	BINDING SITE FOR RESIDUE MG A 422
20	CC2	SOFTWARE	G A:142 , HOH A:514 , HOH A:515	BINDING SITE FOR RESIDUE MG A 423
21	CC3	SOFTWARE	G A:135 , G A:136 , U A:225	BINDING SITE FOR RESIDUE MG A 424
22	CC4	SOFTWARE	A A:57 , G A:58	BINDING SITE FOR RESIDUE SPM A 425
23	CC5	SOFTWARE	C A:38 , C A:39 , G A:242 , G A:243 , G A:244	BINDING SITE FOR RESIDUE EPE A 426
24	CC6	SOFTWARE	A A:115 , C A:116 , G A:117	BINDING SITE FOR RESIDUE EPE A 427
25	CC7	SOFTWARE	U A:96 , G A:97 , G A:98	BINDING SITE FOR RESIDUE EPE A 428

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:DNA/RNA  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
                 4fau A  -4 GUUAUGUGCCCGGCAUGGGUGCAGUCUAUAGGGUGAGAGUCCCGAACUGUGAAGGCAGAAGUAACAGUUAGCCUAACGCAAGGGUGUCCGUGGCGACAUGGAAUCUGAAGGAAGCGGACGGCAAACCUUCGGUCUGAGGAACACGAACUUCAUAUGAGGCUAGGUAUCAAUGGAUGAGUUUGCAUAACAAAACAAAGUCCUUUCUGCCAAAGUUGGUACAGAGUAAAUGAAGCAGAUUGAUGAAGGGAAAGACUGCAUUCUUACCCGGGGAGGUCUGGAAACAGAAGUCAGCAGAAGUCAUAGUACCCUGUUCGCAGGGGAAGGACGGAACAAGUAUGGCGUUCGCGCCUAAGCUUGAACCGCCGUAUACCGAACGGUACGUACGGUGGUGUG 390
                                ||   7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387   
                                0|                                                                                                                                                                                                                                                                                                                                                                                                   
                                 3

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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