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4FAU
Asym. Unit
Info
Asym.Unit (369 KB)
Biol.Unit 1 (363 KB)
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(1)
Title
:
STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN THE PRESENCE OF LI+, MG2+ AND 5'-EXON
Authors
:
M. Marcia, A. M. Pyle
Date
:
22 May 12 (Deposition) - 14 Nov 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.87
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ribozyme, Self-Splicing, Retrotransposition, Spliceosome, Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Marcia, A. M. Pyle
Visualizing Group Ii Intron Catalysis Through The Stages Of Splicing.
Cell(Cambridge, Mass. ) V. 151 497 2012
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Hetero Components
(3, 28)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
1c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
2r: MAGNESIUM ION (MGr)
2s: MAGNESIUM ION (MGs)
2t: MAGNESIUM ION (MGt)
2u: MAGNESIUM ION (MGu)
2v: MAGNESIUM ION (MGv)
2w: MAGNESIUM ION (MGw)
2x: MAGNESIUM ION (MGx)
3a: SPERMINE (SPMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPE
3
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
MG
24
Ligand/Ion
MAGNESIUM ION
3
SPM
1
Ligand/Ion
SPERMINE
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
A A:184
BINDING SITE FOR RESIDUE MG A 401
02
AC2
SOFTWARE
U A:4
BINDING SITE FOR RESIDUE MG A 402
03
AC3
SOFTWARE
A A:154 , G A:155
BINDING SITE FOR RESIDUE MG A 403
04
AC4
SOFTWARE
G A:324 , G A:325
BINDING SITE FOR RESIDUE MG A 404
05
AC5
SOFTWARE
A A:120 , A A:121 , HOH A:528
BINDING SITE FOR RESIDUE MG A 405
06
AC6
SOFTWARE
U A:59 , HOH A:513
BINDING SITE FOR RESIDUE MG A 406
07
AC7
SOFTWARE
C A:286 , A A:287 , G A:288
BINDING SITE FOR RESIDUE MG A 407
08
AC8
SOFTWARE
G A:107 , HOH A:530 , HOH A:531 , HOH A:532
BINDING SITE FOR RESIDUE MG A 408
09
AC9
SOFTWARE
C A:372 , HOH A:533 , HOH A:534
BINDING SITE FOR RESIDUE MG A 410
10
BC1
SOFTWARE
C A:119 , A A:174 , G A:239 , HOH A:525 , HOH A:526 , HOH A:527
BINDING SITE FOR RESIDUE MG A 411
11
BC2
SOFTWARE
U A:66 , A A:67
BINDING SITE FOR RESIDUE MG A 412
12
BC3
SOFTWARE
G A:284
BINDING SITE FOR RESIDUE MG A 413
13
BC4
SOFTWARE
A A:186
BINDING SITE FOR RESIDUE MG A 415
14
BC5
SOFTWARE
C A:6 , HOH A:539
BINDING SITE FOR RESIDUE MG A 416
15
BC6
SOFTWARE
G A:169
BINDING SITE FOR RESIDUE MG A 417
16
BC7
SOFTWARE
A A:67 , G A:68 , HOH A:505 , HOH A:536
BINDING SITE FOR RESIDUE MG A 418
17
BC8
SOFTWARE
U A:285
BINDING SITE FOR RESIDUE MG A 419
18
BC9
SOFTWARE
A A:77 , A A:105 , G A:111
BINDING SITE FOR RESIDUE MG A 421
19
CC1
SOFTWARE
A A:283
BINDING SITE FOR RESIDUE MG A 422
20
CC2
SOFTWARE
G A:142 , HOH A:514 , HOH A:515
BINDING SITE FOR RESIDUE MG A 423
21
CC3
SOFTWARE
G A:135 , G A:136 , U A:225
BINDING SITE FOR RESIDUE MG A 424
22
CC4
SOFTWARE
A A:57 , G A:58
BINDING SITE FOR RESIDUE SPM A 425
23
CC5
SOFTWARE
C A:38 , C A:39 , G A:242 , G A:243 , G A:244
BINDING SITE FOR RESIDUE EPE A 426
24
CC6
SOFTWARE
A A:115 , C A:116 , G A:117
BINDING SITE FOR RESIDUE EPE A 427
25
CC7
SOFTWARE
U A:96 , G A:97 , G A:98
BINDING SITE FOR RESIDUE EPE A 428
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (369 KB)
Header - Asym.Unit
Biol.Unit 1 (363 KB)
Header - Biol.Unit 1
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