4FA3 - JenaLib

Title :   CRYSTAL STRUCTURE OF HUMAN 17BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 5 IN COMPLEX WITH (R)-1-(NAPHTHALEN-2-YLSULFONYL)PIPERIDINE-3-CARBOXYLIC ACID (86)

Authors :   A. P. Turnbull, S. M. F. Jamieson, D. G. Brooke, D. Heinrich, G. J. Atwell E. J. Hamilton, L. J. M. Rigoreau, E. Trivier, C. Soudy, S. S. Samlal, P. E. Schroeder, T. Raynham, J. U. Flanagan, W. A. Denny

Date :   21 May 12 (Deposition) - 10 Oct 12 (Release) - 10 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : A

Keywords :   Tim-Barrel, Aldo-Keto Reductase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. M. Jamieson, D. G. Brooke, D. Heinrich, G. J. Atwell, S. Silva, E. J. Hamilton, A. P. Turnbull, L. J. Rigoreau, E. Trivier, C. Soudy, S. S. Samlal, P. J. Owen, E. Schroeder, T. Raynham, J. U. Flanagan, W. A. Denny
3-(3, 4-Dihydroisoquinolin-2(1H)-Ylsulfonyl)Benzoic Acids; A New Class Of Highly Potent And Selective Inhibitors Of The Type 5 17-Beta-Hydroxysteroid Dehydrogenase Akr1C3
J. Med. Chem. V. 55 7746 2012
PubMed-ID: 22877157 | Reference-DOI: 10.1021/JM3007867

Compounds

Molecule 1 - ALDO-KETO REDUCTASE FAMILY 1 MEMBER C3
	Chains	:	A
	EC Number	:	1.-.-.-, 1.1.1.213, 1.1.1.112, 1.1.1.188, 1.1.1.63, 1.1.1.64, 1.3.1.20
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21A
	Expression System Strain	:	BL21 DE3
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	AKR1C3, DDH1, HSD17B5, KIAA0119, PGFS
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 5, 17-BETA-HSD 5, 3-ALPHA-HSD TYPE II, BRAIN, 3-ALPHA-HYDROXYSTEROID DEHYDROGENASE TYPE 2, 3-ALPHA-HSD TYPE 2, CHLORDECONE REDUCTASE HOMOLOG HAKRB, DIHYDRODIOL DEHYDROGENASE 3, DD-3, DD3, DIHYDRODIOL DEHYDROGENASE TYPE I, HA1753, INDANOL DEHYDROGENASE, PROSTAGLANDIN F SYNTHASE, PGFS, TESTOSTERONE 17-BETA-DEHYDROGENASE 5, TRANS-1,2-DIHYDROBENZENE- 1,2-DIOL DEHYDROGENASE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:22 , THR A:23 , TYR A:24 , ASP A:50 , TYR A:55 , HIS A:117 , SER A:166 , ASN A:167 , GLN A:190 , TYR A:216 , SER A:217 , LEU A:219 , GLY A:220 , SER A:221 , GLN A:222 , LEU A:236 , ALA A:253 , LEU A:268 , LYS A:270 , SER A:271 , TYR A:272 , ARG A:276 , GLN A:279 , ASN A:280 , 0SL A:402 , HOH A:501 , HOH A:504 , HOH A:530 , HOH A:603	BINDING SITE FOR RESIDUE NAP A 401
2	AC2	SOFTWARE	LEU A:54 , TYR A:55 , TRP A:86 , HIS A:117 , ASN A:167 , TYR A:216 , TRP A:227 , PHE A:311 , NAP A:401 , ACT A:404 , HOH A:530	BINDING SITE FOR RESIDUE 0SL A 402
3	AC3	SOFTWARE	GLN A:6 , PRO A:17 , VAL A:18 , LEU A:19 , GLY A:45 , PHE A:46 , ARG A:47 , PHE A:284	BINDING SITE FOR RESIDUE EDO A 403
4	AC4	SOFTWARE	SER A:87 , SER A:118 , MET A:120 , PHE A:311 , 0SL A:402	BINDING SITE FOR RESIDUE ACT A 404

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4fa3a_ A: Prostaglandin d2 11-ketoreductase (akr1c3)                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eee.eeee.......hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee..............hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee.................hhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhh..hhhhhhhhhh.........hhhhhh...hhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fa3 A   6 QCVKLNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGIFDIVDLCTTWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLVAYSALGSQRDKRWVDPNSPVLLEDPVLCALAKKHKRTPALIALRYQLQRGVVVLAKSYNEQRIRQNVQVFEFQLTAEDMKAIDGLDRNLHYFNSDSFASHPNYPYSDE 322
                                    15        25        35        45        55        65        75        85        95       105       115       125|      147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317     
                                                                                                                                                 125|                                                                                                                                                                                        
                                                                                                                                                  138

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (62, 62)

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	Cis Peptide Bonds
		Pro A:124 - Gly A:125	[ RasMol ]

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Description