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(-) Description

Title :  MOLECULAR ANALYSIS OF THE INTERACTION BETWEEN THE PROSTACYCLIN RECEPTOR AND THE FIRST PDZ DOMAIN OF PDZK1
 
Authors :  O. Kocher, G. Birrane, B. T. Kinsella, E. P. Mulvaney
Date :  17 May 12  (Deposition) - 27 Feb 13  (Release) - 27 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Pdz Domain, Adaptor Protein, Prostacyclin Receptor, Chimera Protein, Fusion Protein, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Birrane, E. P. Mulvaney, R. Pal, B. T. Kinsella, O. Kocher
Molecular Analysis Of The Prostacyclin Receptor'S Interaction With The Pdz1 Domain Of Its Adaptor Protein Pdzk1.
Plos One V. 8 53819 2013
PubMed-ID: 23457445  |  Reference-DOI: 10.1371/JOURNAL.PONE.0053819

(-) Compounds

Molecule 1 - NA(+)/H(+) EXCHANGE REGULATORY COFACTOR NHE-RF3, PROSTACYCLIN RECEPTOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-4T-3
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: PDZ1, UNP RESIDUES 7-106, PROSTACYCLIN RECEPTOR C-TERMINUS, 409-415
    Gene: CAP70, NHERF3, PDZK1, PROSTACYCLIN RECEPTOR, PTGIR
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: NHERF-3, CFTR-ASSOCIATED PROTEIN OF 70 KDA, NA(+)/H(+) EXCHANGER REGULATORY FACTOR 3, NA/PI COTRANSPORTER C-TERMINAL- ASSOCIATED PROTEIN 1, NAPI-CAP1, PDZ DOMAIN-CONTAINING PROTEIN 1, SODIUM-HYDROGEN EXCHANGER REGULATORY FACTOR 3, PROSTAGLANDIN I2 RECEPTOR, PGI RECEPTOR, PGI2 RECEPTOR, PROSTANOID IP RECEPTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4F8K)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains d4f8ka_ A: automated matches                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.........eee........eee.....hhhhhh......eeeee..ee....hhhhhhhhhhhh..eeeeeeehhhhhhhhhhh..hhhhh...eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4f8k A   5 GSPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDIAACSLC 113
                                    14        24        34        44        54        64        74        84        94       104         


Chain B from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains d4f8kb_ B: automated matches                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........eeeee.......eee.....hhhhhh......eeeee..ee....hhhhhhhhhhh...eeeeeeehhhhhhhhhhh..hhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4f8k B   5 GSPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDIAACSLC 113
                                    14        24        34        44        54        64        74        84        94       104
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (24, 26)

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 Related Entries

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        NHRF3_MOUSE | Q9JIL4: 2d90 2edz 3ngh 3r68 3r69 4r2z

(-) Related Entries Specified in the PDB File

3ngh MOLECULAR ANALYSIS OF THE INTERACTION OF SR-BI WITH THE FIRST PDZ DOMAIN OF PDZK1.