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(-) Description

Title :  SOLUTION STRUCTURE OF THE THIRD PDZ DOMAIN OF PDZ DOMAIN CONTAINING PROTEIN 1
 
Authors :  X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  08 Dec 05  (Deposition) - 08 Dec 06  (Release) - 31 Mar 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Pdz Domain, Pdz Domain Containing 1, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The Third Pdz Domain Of Pdz Domain Containing Protein 1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PDZ DOMAIN CONTAINING PROTEIN 1
    ChainsA
    EngineeredYES
    Expression SystemCELL FREE PROTEIN SYNTHESIS
    Expression System PlasmidP050425-05
    Expression System Vector TypePLASMID
    FragmentPDZ DOMAIN
    GenePDZK1
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymCFTR-ASSOCIATED PROTEIN OF 70 KDA, NA/PI COTRANSPORTER C-TERMINAL-ASSOCIATED PROTEIN, NAPI-CAP1, NA+, /H+, EXCHANGER REGULATORY FACTOR 3, SODIUM-HYDROGEN EXCHANGER REGULATORY FACTOR 3

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2D90)

(-) Sites  (0, 0)

(no "Site" information available for 2D90)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2D90)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2D90)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2D90)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.NHRF3_MOUSE9-90
135-215
243-323
378-454
  1-
-
A:9-89
-

(-) Exons   (0, 0)

(no "Exon" information available for 2D90)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:102
 aligned with NHRF3_MOUSE | Q9JIL4 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:174
                                   200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
          NHRF3_MOUSE   191 ASHEEVVEKVTKSGSRIMFLLVDKETARCHSEQKTQFKRETASLKLLPHQPRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESIYSLARFSPLLYCQSQELPNGSVKEGPAPIPAPLEATG 364
               SCOP domains d2          d90                                  a_ A: automated matches                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..----------...----------------------------------..eeeeee........eeee......eeee.................eeeee........hhhhhhhhhhhh..eeeeee............--------------------...--------.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE PDZ  PDB: -              ---------------------------PDZ  PDB: A:9-89 UniProt: 243-323                                                ----------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2d90 A   1 GS----------SGS----------------------------------SGRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESIYSLS--------------------GPS--------SG 102
                             |       -  | |    -         -         -         6        16        26        36        46        56        66        76        86        96|        -         - | |     -  | 
                             2          3 5                                  6                                                                                         97                   98 |      101 
                                                                                                                                                                                             100          

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2D90)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2D90)

(-) Gene Ontology  (12, 12)

NMR Structure(hide GO term definitions)
Chain A   (NHRF3_MOUSE | Q9JIL4)
molecular function
    GO:0030165    PDZ domain binding    Interacting selectively and non-covalently with a PDZ domain of a protein, a domain found in diverse signaling proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0015879    carnitine transport    The directed movement of carnitine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane.
    GO:0090002    establishment of protein localization to plasma membrane    The directed movement of a protein to a specific location in the plasma membrane.
    GO:0034767    positive regulation of ion transmembrane transport    Any process that activates or increases the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other.
    GO:0090314    positive regulation of protein targeting to membrane    Any process that increases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein.
    GO:0044070    regulation of anion transport    Any process that modulates the frequency, rate or extent of the directed movement of anions, atoms or small molecules with a net negative charge into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0031526    brush border membrane    The portion of the plasma membrane surrounding the brush border.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NHRF3_MOUSE | Q9JIL42edz 3ngh 3r68 3r69 4f8k 4r2z

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