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(-) Description

Title :  MOLECULAR ANALYSIS OF THE INTERACTION OF THE HDL-RECEPTOR SR-BI WITH THE PDZ3 DOMAIN OF ITS ADAPTOR PROTEIN PDZK1
 
Authors :  O. Kocher, G. Birrane, M. Krieger
Date :  21 Mar 11  (Deposition) - 18 May 11  (Release) - 27 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Pdz Domain, Adaptor Protein, Sr-Bi, Chimera, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  O. Kocher, G. Birrane, A. Yesilaltay, S. Shechter, R. Pal, K. Daniels, M. Krieger
Identification Of The Pdz3 Domain Of The Adaptor Protein Pdzk1 As A Second, Physiologically Functional Binding Site For The C Terminus Of The High Density Lipoprotein Receptor Scavenger Receptor Class B Type I.
J. Biol. Chem. V. 286 25171 2011
PubMed-ID: 21602281  |  Reference-DOI: 10.1074/JBC.M111.242362

(-) Compounds

Molecule 1 - NA(+)/H(+) EXCHANGE REGULATORY COFACTOR NHE-RF3, SCAVENGER RECEPTOR CLASS B MEMBER 1
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX-4T-3
    Expression System StrainJM109
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentPDZ3 (UNP RESIDUES 239-323), SR-BI C-TERMINUS (UNP RESIDUES 505-509)
    GeneCAP70, NHERF3, PDZK1, SCARB1
    Organism CommonMOUSE,MOUSE
    Organism ScientificMUS MUSCULUS, MUS MUSCULUS
    Organism Taxid10090,10090
    Other DetailsCHIMERA BETWEEN TWO GENES
    SynonymNHERF-3, CFTR-ASSOCIATED PROTEIN OF 70 KDA, NA(+)/H(+) EXCHANGER REGULATORY FACTOR 3, NA/PI COTRANSPORTER C-TERMINAL- ASSOCIATED PROTEIN 1, NAPI-CAP1, PDZ DOMAIN-CONTAINING PROTEIN 1, SODIUM-HYDROGEN EXCHANGER REGULATORY FACTOR 3, SR-BI

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B
Biological Unit 3 (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CIT-1Ligand/IonCITRIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:41 , GLY A:293 , LYS A:294 , SER A:295 , HOH B:102 , GLY B:239 , ASN B:285 , LEU B:287 , LEU B:320 , ASP B:321 , LYS B:322BINDING SITE FOR RESIDUE CIT B 2502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R69)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3R69)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R69)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.NHRF3_MOUSE9-90
135-215
243-323
 
378-454
  2-
-
A:243-322
B:243-322
-
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.NHRF3_MOUSE9-90
135-215
243-323
 
378-454
  1-
-
A:243-322
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.NHRF3_MOUSE9-90
135-215
243-323
 
378-454
  1-
-
-
B:243-322
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.NHRF3_MOUSE9-90
135-215
243-323
 
378-454
  2-
-
A:243-322
B:243-322
-

(-) Exons   (0, 0)

(no "Exon" information available for 3R69)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:85
 aligned with NHRF3_MOUSE | Q9JIL4 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:88
                                   249       259       269       279       289       299       309       319        
          NHRF3_MOUSE   240 QPRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESI 327
               SCOP domains d3r69a_ A: automated m   atches                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........eeee..---.eeee.....hhhhhh......eeeee..ee....hhhhhhhhhhhh..eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PDZ  PDB: A:243-322 UniProt: 243-323                                             ---- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 3r69 A 240 SPRVVVIKKGSNGYGFYLRAGP---GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKQEAKL 327
                                   249       259 |   | 269       279       289       299       309       319        
                                               261 265                                                              

Chain A from PDB  Type:PROTEIN  Length:85
 aligned with SCRB1_MOUSE | Q61009 from UniProtKB/Swiss-Prot  Length:509

    Alignment length:207
                                   312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       
          SCRB1_MOUSE   303 APDTLFANGSVYPPNEGFCPCRESGIQNVSTCRFGAPLFLSHPHFYNADPVLSEAVLGLNPNPKEHSLFLDIHPVTGIPMNCSVKMQLSLYIKSVKGIGQTGKIEPVVLPLLWFEQSGAMGGKPLSTFYTQLVLMPQVLHYAQYVLLGLGGLLLLVPIICQLRSQEKCFLFWSGSKKGSQDKEAIQAYSESLMSPAAKGTVLQEAKL 509
               SCOP domains d3r69a_                A: a     uto         ma            ted m  atches                                                                                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee---------------....-----...---------.e------------eee..--.eeee....--.hhhhh-------------h.....---.eee----------ee..ee...-------------------.hhhhhhhhh-------------------hhh.-.eeeeeee..------------..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r69 A 240 SPRVVVIK---------------KGSN-----GYG---------FY------------LRAGP--GQIIKDIEP--GSPAEA-------------AGLKNN---DLVV----------AVNGKSVEA-------------------LDHDGVVEMI-------------------RKGG-DQTTLLVLDK------------QEAKL 327
                                   | -         -   |  |  -  | |    -    ||   -       258  |  | 269   |  |277 |       -     | 284|   |  | -       291      |  -         -      |302     |   -         -     |  |-|      322         -  |    
                                 247             248  |   252 |       255|          257 261  |     273  |  279           280  285 286  |        290     298                 299      308                 309  | |      322          323    
                                                    251     254        256                 265        274                            289                                                                    312 |                          
                                                                                                                                                                                                              313                          

Chain B from PDB  Type:PROTEIN  Length:87
 aligned with NHRF3_MOUSE | Q9JIL4 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:124
                                   213       223       233       243       253       263       273       283       293       303       313       323    
          NHRF3_MOUSE   204 GSRIMFLLVDKETARCHSEQKTQFKRETASLKLLPHQPRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESI 327
               SCOP domains d3                                   r69b_ B: automated mat  ches                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --                                   -PDZ-3r69B01 B:242-320                                                          ------- Pfam domains (1)
           Pfam domains (2) --                                   -PDZ-3r69B02 B:242-320                                                          ------- Pfam domains (2)
         Sec.struct. author .e-----------------------------------eeeeeee........eeee...--.eeee.....hhhhhh......eeeee..ee....hhhhhhhhhhh...eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE PDZ  PDB: - ---------------------------PDZ  PDB: B:243-322 UniProt: 243-323                                             ---- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r69 B 239 GS-----------------------------------PRVVVIKKGSNGYGFYLRAGPE--GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKQEAKL 327
                             |       -         -         -       243       253        |- |     273       283       293       303       313       323    
                           240                                 241                  262  |                                                              
                                                                                       265                                                              

Chain B from PDB  Type:PROTEIN  Length:87
 aligned with SCRB1_MOUSE | Q61009 from UniProtKB/Swiss-Prot  Length:509

    Alignment length:215
                                   304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504     
          SCRB1_MOUSE   295 GIPTYRFTAPDTLFANGSVYPPNEGFCPCRESGIQNVSTCRFGAPLFLSHPHFYNADPVLSEAVLGLNPNPKEHSLFLDIHPVTGIPMNCSVKMQLSLYIKSVKGIGQTGKIEPVVLPLLWFEQSGAMGGKPLSTFYTQLVLMPQVLHYAQYVLLGLGGLLLLVPIICQLRSQEKCFLFWSGSKKGSQDKEAIQAYSESLMSPAAKGTVLQEAKL 509
               SCOP domains d3r69      b_ B:      autom                         at            ed mat ches                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---PD      Z-3r69     B01 B                         :2            42-320                                                                                                                            --            ----- Pfam domains (1)
           Pfam domains (2) ---PD      Z-3r69     B02 B                         :2            42-320                                                                                                                            --            ----- Pfam domains (2)
         Sec.struct. author .eeee------eeee..-----.....-------------------------.e------------eee...-.eeee....--.hhhhh-------------h.....---.eee----------ee..ee...-------------------.hhhhhhhhh-------------------hh..-.eeeeeeee.------------..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r69 B 239 GSPRV------VVIKKG-----SNGYG-------------------------FY------------LRAGPE-GQIIKDIEP--GSPAEA-------------AGLKNN---DLVV----------AVNGKSVEA-------------------LDHDGVVEMI-------------------RKGG-DQTTLLVLDK------------QEAKL 327
                                |    - |    |  -  |   |  -         -         -  ||     -      |260 | |   271 |  |  279         -   |    |-  |  |   -      |293    |    -         -    |  304   |     -         -   |  |314       | -         -|    
                              243    244  249   250 254                       255|          257  262 |     273  |  279           280  285 286  |        290     298                 299      308                 309  | |      322          323    
                                                                               256                 265        274                            289                                                                    312 |                          
                                                                                                                                                                                                                      313                          

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R69)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: PDZ-like (184)
(-)
Family: PDZ (172)
1aPDZ-3r69B01B:242-320
1bPDZ-3r69B02B:242-320

(-) Gene Ontology  (58, 61)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (SCRB1_MOUSE | Q61009)
molecular function
    GO:0034186    apolipoprotein A-I binding    Interacting selectively and non-covalently with apolipoprotein A-I.
    GO:0034185    apolipoprotein binding    Interacting selectively and non-covalently with an apolipoprotein, the protein component of a lipoprotein complex.
    GO:0008035    high-density lipoprotein particle binding    Interacting selectively and non-covalently with high-density lipoprotein particle, a lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE.
    GO:0070506    high-density lipoprotein particle receptor activity    Combining with a high-density lipoprotein particle and delivering the high-density lipoprotein into the cell via endocytosis.
    GO:0001530    lipopolysaccharide binding    Interacting selectively and non-covalently with lipopolysaccharide.
    GO:0001875    lipopolysaccharide receptor activity    Combining with a lipopolysaccharide and transmitting the signal across the cell membrane to initiate a change in cell activity. Lipopolysaccharides (LPS) are major components of the outer membrane of Gram-negative bacteria, making them prime targets for recognition by the immune system.
    GO:0030169    low-density lipoprotein particle binding    Interacting selectively and non-covalently with a low-density lipoprotein particle, a lipoprotein particle that is rich in cholesterol esters and low in triglycerides, is typically composed of APOB100 and APOE, and has a density of 1.02-1.06 g/ml and a diameter of between 20-25 nm.
    GO:0001786    phosphatidylserine binding    Interacting selectively and non-covalently with phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0044406    adhesion of symbiont to host    The attachment of a symbiont to its host via adhesion molecules, general stickiness etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0006702    androgen biosynthetic process    The chemical reactions and pathways resulting in the formation of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics.
    GO:0043534    blood vessel endothelial cell migration    The orderly movement of an endothelial cell into the extracellular matrix in order to form new blood vessels during angiogenesis.
    GO:0006707    cholesterol catabolic process    The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
    GO:0033344    cholesterol efflux    The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle.
    GO:0042632    cholesterol homeostasis    Any process involved in the maintenance of an internal steady state of cholesterol within an organism or cell.
    GO:0070508    cholesterol import    The directed movement of cholesterol into a cell or organelle.
    GO:0030301    cholesterol transport    The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0032497    detection of lipopolysaccharide    The series of events in which a lipopolysaccharide stimulus is received by a cell and converted into a molecular signal. Lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0001935    endothelial cell proliferation    The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium.
    GO:0034384    high-density lipoprotein particle clearance    The process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.
    GO:0034375    high-density lipoprotein particle remodeling    The acquisition, loss or modification of a protein or lipid within a high-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL.
    GO:0050892    intestinal absorption    Any process in which nutrients are taken up from the contents of the intestine.
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0015920    lipopolysaccharide transport    The directed movement of lipopolysaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A lipopolysaccharide is any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide.
    GO:0031663    lipopolysaccharide-mediated signaling pathway    A series of molecular signals initiated by the binding of a lipopolysaccharide (LPS) to a receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. Lipopolysaccharides are major components of the outer membrane of Gram-negative bacteria, making them prime targets for recognition by the immune system.
    GO:0034383    low-density lipoprotein particle clearance    The process in which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.
    GO:0006910    phagocytosis, recognition    The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell.
    GO:0015914    phospholipid transport    The directed movement of phospholipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Phospholipids are any lipids containing phosphoric acid as a mono- or diester.
    GO:0010886    positive regulation of cholesterol storage    Any process that increases the rate or extent of cholesterol storage. Cholesterol storage is the accumulation and maintenance in cells or tissues of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
    GO:0051000    positive regulation of nitric-oxide synthase activity    Any process that activates or increases the activity of the enzyme nitric-oxide synthase.
    GO:0010867    positive regulation of triglyceride biosynthetic process    Any process that increases the rate, frequency, or extent of triglyceride biosynthesis. Triglyceride biosynthesis is the collection of chemical reactions and pathways resulting in the formation of triglyceride, any triester of glycerol.
    GO:0006898    receptor-mediated endocytosis    An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles.
    GO:0043654    recognition of apoptotic cell    The process in which a cell interprets signals (in the form of specific proteins and lipids) on the surface of a dying cell which it will engulf and remove by phagocytosis.
    GO:0050764    regulation of phagocytosis    Any process that modulates the frequency, rate or extent of phagocytosis, the process in which phagocytes engulf external particulate material.
    GO:0010899    regulation of phosphatidylcholine catabolic process    Any process that modulates the rate, frequency or extent of phosphatidylcholine catabolism. Phosphatidylcholine catabolic processes are the chemical reactions and pathways resulting in the breakdown of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline.
    GO:0043691    reverse cholesterol transport    The directed movement of peripheral cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism.
    GO:0070328    triglyceride homeostasis    Any process involved in the maintenance of an internal steady state of triglyceride within an organism or cell.
    GO:0035461    vitamin transmembrane transport    The process in which a vitamin is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
cellular component
    GO:0005901    caveola    A membrane raft that forms small pit, depression, or invagination that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Examples include flask-shaped invaginations of the plasma membrane in adipocytes associated with caveolin proteins, and minute pits or incuppings of the cell membrane formed during pinocytosis. Caveolae may be pinched off to form free vesicles within the cytoplasm.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0005765    lysosomal membrane    The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0031528    microvillus membrane    The portion of the plasma membrane surrounding a microvillus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B   (NHRF3_MOUSE | Q9JIL4)
molecular function
    GO:0030165    PDZ domain binding    Interacting selectively and non-covalently with a PDZ domain of a protein, a domain found in diverse signaling proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0015879    carnitine transport    The directed movement of carnitine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane.
    GO:0090002    establishment of protein localization to plasma membrane    The directed movement of a protein to a specific location in the plasma membrane.
    GO:0034767    positive regulation of ion transmembrane transport    Any process that activates or increases the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other.
    GO:0090314    positive regulation of protein targeting to membrane    Any process that increases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein.
    GO:0044070    regulation of anion transport    Any process that modulates the frequency, rate or extent of the directed movement of anions, atoms or small molecules with a net negative charge into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0031526    brush border membrane    The portion of the plasma membrane surrounding the brush border.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NHRF3_MOUSE | Q9JIL42d90 2edz 3ngh 3r68 4f8k 4r2z
        SCRB1_MOUSE | Q610095ktf

(-) Related Entries Specified in the PDB File

2d90 STRUCTURE OF PDZK1 PDZ3 SOLVED BY NMR SPECTROSCOPY
3r68 STRUCTURE OF UNBOUND PDZK1 PDZ3 SOLVED BY X-RAY CRYSTALLOGRAPHY