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(-) Description

Title :  STRUCTURE OF POLYMERASE-INTERACTING DOMAIN OF HUMAN REV1 IN COMPLEX WITH TRANSLESIONAL SYNTHESIS POLYMERASE ZETA
 
Authors :  D. N. Liu, K. S. Ryu, J. S. Ko, B. S. Choi
Date :  01 May 12  (Deposition) - 08 May 13  (Release) - 08 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A (1x),B (1x),C (1x)
Keywords :  Rev1, Rev3, Rev7, Polymerase-Interacting Domain, Y-Family Polymerase, B-Family Polymerase, Translesional Synthesis Polymerase, Dna Damage Tolerance, Scaffold, Transferase-Transcription Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. N. Liu, K. S. Ryu, J. S. Ko, B. S. Choi
Insights Into The Scaffold Mechanism Of Human Rev1 In Translesional Synthesis Revealed By Structural Studies On Its Polymerase-Interacting Domain
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA REPAIR PROTEIN REV1
    Chains: A
    EC Number: 2.7.7.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: PROTEIN INTERACTION DOMAIN, UNP RESIDUES 1156-1251
    Gene: REV1, REV1L
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: REV1, HREV1, ALPHA INTEGRIN-BINDING PROTEIN 80, AIBP80, REV1-LIKE TERMINAL DEOXYCYTIDYL TRANSFERASE
 
Molecule 2 - PEPTIDE FROM DNA POLYMERASE ZETA CATALYTIC SUBUNIT
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDUET-1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1873-1895
    Gene: REV3L, POLZ, REV3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN REVERSIONLESS 3-LIKE, REV3-LIKE, HREV3
 
Molecule 3 - MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDUET-1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: REGULARTORY SUBUNIT, UNP RESIDUES 7-209
    Gene: MAD2L2, MAD2B, REV7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MITOTIC ARREST DEFICIENT 2-LIKE PROTEIN 2, MAD2-LIKE PROTEIN 2, REV7 HOMOLOG, HREV7

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (1x): A (1x)B (1x)C (1x)

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 4ext A 156 APNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKVT 251
                                   165       175       185       195       205       215       225       235       245      


Chain B from PDB  Type:PROTEIN  Length:23
                                                       
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author ....eeee.....hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 4ext B 873 RTANILKPLMSPPSREEIMATLL 895
                                   882       892   


Chain C from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhh...hhh.eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee.....eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...........eeeeeeee...hhhhhhhhh......eee.hhhhhh...eeeeeeeee.....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ext C   6 TQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHK 209
                                    15        25        35        45        55        65        75        85        95       105|      121       131       141       151       161       171       181       191       201        
                                                                                                                             105|                                                                                                 
                                                                                                                              112
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(-) Gene Ontology  (52, 70)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MD2L2_HUMAN | Q9UI95: 3abd 3abe 3vu7 4gk0 4gk5
        REV1_HUMAN | Q9UBZ9: 2ebw 2lsi 2lsk 2lsy 2n1g 3gqc 3vu7 4ba9 4gk0 4gk5
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