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(-) Description

Title :  THE STRUCTURAL BASIS FOR THE COORDINATION OF Y-FAMILY TRANSLESION DNA POLYMERASES BY REV1
 
Authors :  C. G. Grummitt, M. L. Kilkenny, A. Frey, S. M. Roe, A. W. Oliver, J. E. Sale L. H. Pearl
Date :  12 Sep 12  (Deposition) - 25 Sep 13  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.73
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F  (2x)
Keywords :  Transferase, Tls, Dna Repair (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. G. Grummitt, M. L. Kilkenny, A. Frey, S. M. Roe, A. W. Oliver, J. E. Sale, L. H. Pearl
The Structural Basis For The Coordination Of Y- Family Translesion Dna Polymerases By Rev1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA POLYMERASE KAPPA, DNA REPAIR PROTEIN REV1
    ChainsA, B, C, D, E, F
    EC Number2.7.7.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPTWO-E
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantROSETTA2
    Expression System Vector TypePLASMID
    FragmentC-TERMINAL POLYMERASE INTERACTING DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCHIMERIC FUSION OF HUMAN REV-1 C-TERMINAL POLYMERASE INTERACTING DOMAIN (REV1-PID) WITH THE REV-1 INTERACTING MOTIF OF POLYMERASE KAPPA (POLKAPPA-RIM).
    Other Details - SourceSYNTHETIC GENE
    SynonymDINB PROTEIN, DINPALPHA INTEGRIN-BINDING PROTEIN 80, AIBP80, REV1-LIKE TERMINAL DEOXYCYTIDYL TRANSFERASE, REV1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)ABCD  
Biological Unit 2 (2x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric Unit (2, 18)
No.NameCountTypeFull Name
1MG8Ligand/IonMAGNESIUM ION
2NI10Ligand/IonNICKEL (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NI-1Ligand/IonNICKEL (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NI-1Ligand/IonNICKEL (II) ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:1234 , HOH A:2025BINDING SITE FOR RESIDUE MG A 2243
02AC2SOFTWAREASP B:1234 , HOH B:2042 , HOH B:2044 , HOH B:2045BINDING SITE FOR RESIDUE MG B 2243
03AC3SOFTWAREASP C:1234 , HOH C:2017BINDING SITE FOR RESIDUE MG C 2243
04AC4SOFTWAREASP D:1234 , HOH D:2033BINDING SITE FOR RESIDUE MG D 2243
05AC5SOFTWAREASP E:1181 , ASP F:1181BINDING SITE FOR RESIDUE MG E 2243
06AC6SOFTWAREASP E:1234 , HOH E:2010 , HOH E:2012BINDING SITE FOR RESIDUE MG E 2244
07AC7SOFTWAREASP F:1234 , HOH F:2011 , HOH F:2012BINDING SITE FOR RESIDUE MG F 2243
08AC8SOFTWAREASP B:1181 , HOH B:2018 , HOH B:2047 , ASP D:1181BINDING SITE FOR RESIDUE MG B 2244
09AC9SOFTWAREHIS A:203 , HIS A:205 , HOH A:2005 , GLY B:201BINDING SITE FOR RESIDUE NI A 2244
10BC1SOFTWAREGLY A:201 , HIS B:203 , HIS B:205 , GLN C:1242BINDING SITE FOR RESIDUE NI B 2245
11BC2SOFTWAREHIS C:203 , HIS C:205 , HOH C:2004 , GLY D:201 , HOH D:2001BINDING SITE FOR RESIDUE NI D 2244
12BC3SOFTWAREGLY C:201 , HIS D:203 , HIS D:205 , HOH D:2004 , GLN E:1242BINDING SITE FOR RESIDUE NI D 2245
13BC4SOFTWAREGLN A:1242 , HIS E:203 , HIS E:205 , GLY F:201BINDING SITE FOR RESIDUE NI E 2245
14BC5SOFTWAREGLY E:201 , HOH E:2001 , HIS F:203 , HIS F:205BINDING SITE FOR RESIDUE NI F 2244
15BC6SOFTWAREASP B:211 , GLU B:1185 , ASP C:211 , GLU C:1185BINDING SITE FOR RESIDUE NI B 2246
16BC7SOFTWAREASP A:211 , GLU A:1185 , ASP D:211 , GLU D:1185BINDING SITE FOR RESIDUE NI A 2245
17BC8SOFTWAREASP E:211 , GLU E:1185BINDING SITE FOR RESIDUE NI E 2246
18BC9SOFTWAREASP F:211 , GLU F:1185 , GLN F:1189BINDING SITE FOR RESIDUE NI F 2245

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BA9)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg C:217 -Gly C:218

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (5, 23)

Asymmetric Unit (5, 23)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029201P1060TREV1_HUMANPolymorphism3087388A/B/C/D/E/FP202T
2UniProtVAR_029202N1074KREV1_HUMANPolymorphism3087393A/B/C/D/E/FS215K
3UniProtVAR_021246T595IPOLK_HUMANPolymorphism5744713A/B/D/E/FG1161I
4UniProtVAR_048887S635NPOLK_HUMANPolymorphism35501530CD1167N
5UniProtVAR_021247I612VPOLK_HUMANPolymorphism3822587A/B/D/E/FT1178V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (5, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029201P1060TREV1_HUMANPolymorphism3087388A/B/C/DP202T
2UniProtVAR_029202N1074KREV1_HUMANPolymorphism3087393A/B/C/DS215K
3UniProtVAR_021246T595IPOLK_HUMANPolymorphism5744713A/B/DG1161I
4UniProtVAR_048887S635NPOLK_HUMANPolymorphism35501530CD1167N
5UniProtVAR_021247I612VPOLK_HUMANPolymorphism3822587A/B/DT1178V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (4, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029201P1060TREV1_HUMANPolymorphism3087388E/FP202T
2UniProtVAR_029202N1074KREV1_HUMANPolymorphism3087393E/FS215K
3UniProtVAR_021246T595IPOLK_HUMANPolymorphism5744713E/FG1161I
5UniProtVAR_021247I612VPOLK_HUMANPolymorphism3822587E/FT1178V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BA9)

(-) Exons   (4, 24)

Asymmetric Unit (4, 24)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002584281aENSE00001515354chr2:100106497-100106279219REV1_HUMAN-00--
1.2ENST000002584282ENSE00000921861chr2:100081447-10008138464REV1_HUMAN1-18180--
1.3bENST000002584283bENSE00000921860chr2:100079084-100078958127REV1_HUMAN19-61430--
1.5ENST000002584285ENSE00001637671chr2:100065966-100065798169REV1_HUMAN61-117570--
1.6ENST000002584286ENSE00001757863chr2:100058931-100058779153REV1_HUMAN117-168520--
1.7aENST000002584287aENSE00001698319chr2:100055772-100055063710REV1_HUMAN168-4052380--
1.9bENST000002584289bENSE00001623485chr2:100052403-100052296108REV1_HUMAN405-441370--
1.10ENST0000025842810ENSE00001751683chr2:100050910-100050794117REV1_HUMAN441-480400--
1.12aENST0000025842812aENSE00000921854chr2:100046410-100046302109REV1_HUMAN480-516370--
1.14bENST0000025842814bENSE00001685794chr2:100040742-100040614129REV1_HUMAN516-559440--
1.15ENST0000025842815ENSE00001749185chr2:100038115-100037961155REV1_HUMAN559-611530--
1.16bENST0000025842816bENSE00001690779chr2:100035409-100035290120REV1_HUMAN611-651410--
1.17bENST0000025842817bENSE00001626429chr2:100029413-100029193221REV1_HUMAN651-724740--
1.18aENST0000025842818aENSE00001733763chr2:100027329-100027157173REV1_HUMAN725-782580--
1.19bENST0000025842819bENSE00001627924chr2:100024593-100024491103REV1_HUMAN782-816350--
1.20bENST0000025842820bENSE00001802837chr2:100022952-100022787166REV1_HUMAN817-872560--
1.20hENST0000025842820hENSE00001790412chr2:100022568-100022372197REV1_HUMAN872-937660--
1.21ENST0000025842821ENSE00001641934chr2:100021140-100020907234REV1_HUMAN938-1015780--
1.22ENST0000025842822ENSE00001774065chr2:100020278-100020158121REV1_HUMAN1016-1056410--
1.23dENST0000025842823dENSE00001793684chr2:100019569-100019352218REV1_HUMAN1056-1128736A:201-217 (gaps)
B:201-217 (gaps)
C:201-220 (gaps)
D:201-217 (gaps)
E:201-217 (gaps)
F:201-217 (gaps)
18
18
25
18
18
18
1.24aENST0000025842824aENSE00000921842chr2:100019263-100019107157REV1_HUMAN1129-1181536A:1156-1181
B:1156-1181
C:1156-1181
D:1156-1181
E:1156-1181
F:1156-1181
26
26
26
26
26
26
1.24eENST0000025842824eENSE00000921841chr2:100018809-100018707103REV1_HUMAN1181-1215356A:1181-1215
B:1181-1215
C:1181-1215
D:1181-1215
E:1181-1215
F:1181-1215
35
35
35
35
35
35
1.25bENST0000025842825bENSE00000921840chr2:100017815-100016938878REV1_HUMAN1215-1251376A:1215-1242
B:1215-1242
C:1215-1242
D:1215-1242
E:1215-1242
F:1215-1242
28
28
28
28
28
28

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:104
 aligned with POLK_HUMAN | Q9UBT6 from UniProtKB/Swiss-Prot  Length:870

    Alignment length:269
                                   545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795         
          POLK_HUMAN    536 GNQALSATECTLEKTDKDKFVKPLEMSHKKSFFDKKRSERKWSHQDTFKCEAVNKQSFQTSQPFQVLKKKMNENLEISENSDDCQILTCPVCFRAQGCISLEALNKHVDECLDGPSISENFKMFSCSHVSATKVNKKENVPASSLCEKQDYEAHPKIKEISSVDCIALVDTIDNSSKAESIDALSNKHSKEECSSLPSKSFNIEHCHQNSSSTVSLENEDVGSFRQEYRQPYLCEVKTGQALVCPVCNVEQKTSDLTLFNVHVDVCLNK  804
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .-----------------------......hhhhhhhhhh--------------........hhhhhhhhhhhhhhhh...hhhhhhhh------------------hhhhhh-------------------------------hhhh.hhhh------------hhhhhhhhhhhhhhh.hhhhh--------------hhhhhhhhh-----------------------------------------------------hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------T------------K---------------------I----------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ba9 A  201 G-----------------------PHMHKKSFFDKKRSER--------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQV------------------VKYCTD-------------------------------LIEEKDLEK------------LDLVIKYMKRLMQQSVESVWN--------------MAFDFILDN-----------------------------------------------------VQVVLQQ 1242
                            |        -         -    |  207       217         -    | 1161      1171      1181        |-         -      1193  |      -         -         -    | 1202  |      -     |1210      1220     |   -         -|       |-         -         -         -         -         -  |      
                            |                     202            217           1156                              1190               1191 1196                            1197    1205         1206                1226           1227    1235                                                  1236      
                          201                                                                                                                                                                                                                                                                            

Chain A from PDB  Type:PROTEIN  Length:104
 aligned with REV1_HUMAN | Q9UBZ9 from UniProtKB/Swiss-Prot  Length:1251

    Alignment length:184
                                  1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238    
          REV1_HUMAN   1059 NPLLHLKAAVKEKKRNKKKKTIGSPKRIQSPLNNKLLNSPAKTLPGACGSPQKLIDGFLKHEGPPAEKPLEELSASTSGVPGLSSLQSDPAGCVRPPAPNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhh-hhhhhh-------------------------------------------------------------------------------........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -T-------------K--------------------------------------------------------------------------------------I----------------V---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.23d  PDB: A:201-217 (gaps) UniProt: 1056-1128 [INCOMPLETE]     Exon 1.24a  PDB: A:1156-1181 UniProt: 1129-1181      ---------------------------------Exon 1.25b  PDB: A:1215-1242 Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------Exon 1.24e  PDB: A:1181-1215       --------------------------- Transcript 1 (2)
                4ba9 A  201 GPHMHKKSFFD-KKRSER-------------------------------------------------------------------------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
                                   210| |    | -         -         -         -         -         -         -         -      1158      1168      1178      1188      1198      1208      1218      1228      1238    
                                    211 |  217                                                                            1156                                                                                      
                                      212                                                                                                                                                                           

Chain B from PDB  Type:PROTEIN  Length:104
 aligned with POLK_HUMAN | Q9UBT6 from UniProtKB/Swiss-Prot  Length:870

    Alignment length:269
                                   545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795         
          POLK_HUMAN    536 GNQALSATECTLEKTDKDKFVKPLEMSHKKSFFDKKRSERKWSHQDTFKCEAVNKQSFQTSQPFQVLKKKMNENLEISENSDDCQILTCPVCFRAQGCISLEALNKHVDECLDGPSISENFKMFSCSHVSATKVNKKENVPASSLCEKQDYEAHPKIKEISSVDCIALVDTIDNSSKAESIDALSNKHSKEECSSLPSKSFNIEHCHQNSSSTVSLENEDVGSFRQEYRQPYLCEVKTGQALVCPVCNVEQKTSDLTLFNVHVDVCLNK  804
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .-----------------------......hhhhhhhhh.--------------........hhhhhhhhhhhhhhhh...hhhhhhhh------------------hhhhhh-------------------------------hhhh.hhhh------------hhhhhhhhhhhhhhh.hhhhh--------------hhhhhhhhh-----------------------------------------------------hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------T------------K---------------------I----------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ba9 B  201 G-----------------------PHMHKKSFFDKKRSER--------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQV------------------VKYCTD-------------------------------LIEEKDLEK------------LDLVIKYMKRLMQQSVESVWN--------------MAFDFILDN-----------------------------------------------------VQVVLQQ 1242
                            |        -         -    |  207       217         -    | 1161      1171      1181        |-         -      1193  |      -         -         -    | 1202  |      -     |1210      1220     |   -         -|       |-         -         -         -         -         -  |      
                          201                     202            217           1156                              1190               1191 1196                            1197    1205         1206                1226           1227    1235                                                  1236      

Chain B from PDB  Type:PROTEIN  Length:104
 aligned with REV1_HUMAN | Q9UBZ9 from UniProtKB/Swiss-Prot  Length:1251

    Alignment length:184
                                  1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238    
          REV1_HUMAN   1059 NPLLHLKAAVKEKKRNKKKKTIGSPKRIQSPLNNKLLNSPAKTLPGACGSPQKLIDGFLKHEGPPAEKPLEELSASTSGVPGLSSLQSDPAGCVRPPAPNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhh-hhhhh.-------------------------------------------------------------------------------........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -T-------------K--------------------------------------------------------------------------------------I----------------V---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.23d  PDB: B:201-217 (gaps) UniProt: 1056-1128 [INCOMPLETE]     Exon 1.24a  PDB: B:1156-1181 UniProt: 1129-1181      ---------------------------------Exon 1.25b  PDB: B:1215-1242 Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------Exon 1.24e  PDB: B:1181-1215       --------------------------- Transcript 1 (2)
                4ba9 B  201 GPHMHKKSFFD-KKRSER-------------------------------------------------------------------------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
                                   210| |    | -         -         -         -         -         -         -         -      1158      1168      1178      1188      1198      1208      1218      1228      1238    
                                    211 |  217                                                                            1156                                                                                      
                                      212                                                                                                                                                                           

Chain C from PDB  Type:PROTEIN  Length:107
 aligned with POLK_HUMAN | Q9UBT6 from UniProtKB/Swiss-Prot  Length:870

    Alignment length:255
                                   568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808     
          POLK_HUMAN    559 LEMSHKKSFFDKKRSERKWSHQDTFKCEAVNKQSFQTSQPFQVLKKKMNENLEISENSDDCQILTCPVCFRAQGCISLEALNKHVDECLDGPSISENFKMFSCSHVSATKVNKKENVPASSLCEKQDYEAHPKIKEISSVDCIALVDTIDNSSKAESIDALSNKHSKEECSSLPSKSFNIEHCHQNSSSTVSLENEDVGSFRQEYRQPYLCEVKTGQALVCPVCNVEQKTSDLTLFNVHVDVCLNKSFIQELRKD  813
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhh---------------------------------------...-........hhh-----hhhhhhhhhhhhh...hhhhhhhhhhh--------------------------------------hhhhhhh.h----------------------hhhhhhhhhhhhh-------hhhh..hh----------------------------------hhhhhhhhhhhh--hhhhhhh Sec.struct. author
                 SAPs(SNPs) -T------------K-------------------------------------------------------------N---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ba9 C  201 GPHMHKKSFFDKKRSER---------------------------------------GSD-ASNLAGAVEFN-----DVKTLLREWITTISDPMEEDILQVVKY--------------------------------------CTDLIEEKD----------------------LEKLDLVIKYMKR-------LMQQSVES----------------------------------VWNMAFDFILDN--VQVVLQQ 1242
                                   210      |  -         -         -         -      | |-|     1165|     1170      1180      1190  |      -         -         -         - |    1202         -         -  |   1210    |    -  |   1223         -         -         -    | 1229     |1237     
                                          217                                     218 | |      1166  1167                      1193                                   1194    1202                   1203        1215    1216   1223                               1224       1235  |      
                                                                                    220 |                                                                                                                                                                                        1236      
                                                                                     1156                                                                                                                                                                                                  

Chain C from PDB  Type:PROTEIN  Length:107
 aligned with REV1_HUMAN | Q9UBZ9 from UniProtKB/Swiss-Prot  Length:1251

    Alignment length:184
                                  1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238    
          REV1_HUMAN   1059 NPLLHLKAAVKEKKRNKKKKTIGSPKRIQSPLNNKLLNSPAKTLPGACGSPQKLIDGFLKHEGPPAEKPLEELSASTSGVPGLSSLQSDPAGCVRPPAPNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhh-hhhhhh----...------------------------------------------------------------------------........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -T-------------K--------------------------------------------------------------------------------------------N--------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.23d  PDB: C:201-220 (gaps) UniProt: 1056-1128 [INCOMPLETE]     Exon 1.24a  PDB: C:1156-1181 UniProt: 1129-1181      ---------------------------------Exon 1.25b  PDB: C:1215-1242 Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------Exon 1.24e  PDB: C:1181-1215       --------------------------- Transcript 1 (2)
                4ba9 C  201 GPHMHKKSFFD-KKRSER----GSD------------------------------------------------------------------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
                                   210| |    | -  | |    -         -         -         -         -         -         -      1158      1168      1178      1188      1198      1208      1218      1228      1238    
                                    211 |  217  218 |                                                                     1156                                                                                      
                                      212         220                                                                                                                                                               

Chain D from PDB  Type:PROTEIN  Length:104
 aligned with POLK_HUMAN | Q9UBT6 from UniProtKB/Swiss-Prot  Length:870

    Alignment length:269
                                   545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795         
          POLK_HUMAN    536 GNQALSATECTLEKTDKDKFVKPLEMSHKKSFFDKKRSERKWSHQDTFKCEAVNKQSFQTSQPFQVLKKKMNENLEISENSDDCQILTCPVCFRAQGCISLEALNKHVDECLDGPSISENFKMFSCSHVSATKVNKKENVPASSLCEKQDYEAHPKIKEISSVDCIALVDTIDNSSKAESIDALSNKHSKEECSSLPSKSFNIEHCHQNSSSTVSLENEDVGSFRQEYRQPYLCEVKTGQALVCPVCNVEQKTSDLTLFNVHVDVCLNK  804
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .-----------------------......hhhhhhhhhh--------------........hhhhhhhhhhhhhhhh...hhhhhhhh------------------hhhhhh-------------------------------hhhh.hhhh------------hhhhhhhhhhhhhhh.hhhhh--------------hhhhhhhhh-----------------------------------------------------hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------T------------K---------------------I----------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ba9 D  201 G-----------------------PHMHKKSFFDKKRSER--------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQV------------------VKYCTD-------------------------------LIEEKDLEK------------LDLVIKYMKRLMQQSVESVWN--------------MAFDFILDN-----------------------------------------------------VQVVLQQ 1242
                            |        -         -    |  207       217         -    | 1161      1171      1181        |-         -      1193  |      -         -         -    | 1202  |      -     |1210      1220     |   -         -|       |-         -         -         -         -         -  |      
                          201                     202            217           1156                              1190               1191 1196                            1197    1205         1206                1226           1227    1235                                                  1236      

Chain D from PDB  Type:PROTEIN  Length:104
 aligned with REV1_HUMAN | Q9UBZ9 from UniProtKB/Swiss-Prot  Length:1251

    Alignment length:184
                                  1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238    
          REV1_HUMAN   1059 NPLLHLKAAVKEKKRNKKKKTIGSPKRIQSPLNNKLLNSPAKTLPGACGSPQKLIDGFLKHEGPPAEKPLEELSASTSGVPGLSSLQSDPAGCVRPPAPNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhh-hhhhhh-------------------------------------------------------------------------------........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -T-------------K--------------------------------------------------------------------------------------I----------------V---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.23d  PDB: D:201-217 (gaps) UniProt: 1056-1128 [INCOMPLETE]     Exon 1.24a  PDB: D:1156-1181 UniProt: 1129-1181      ---------------------------------Exon 1.25b  PDB: D:1215-1242 Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------Exon 1.24e  PDB: D:1181-1215       --------------------------- Transcript 1 (2)
                4ba9 D  201 GPHMHKKSFFD-KKRSER-------------------------------------------------------------------------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
                                   210| |    | -         -         -         -         -         -         -         -      1158      1168      1178      1188      1198      1208      1218      1228      1238    
                                    211 |  217                                                                            1156                                                                                      
                                      212                                                                                                                                                                           

Chain E from PDB  Type:PROTEIN  Length:104
 aligned with POLK_HUMAN | Q9UBT6 from UniProtKB/Swiss-Prot  Length:870

    Alignment length:269
                                   545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795         
          POLK_HUMAN    536 GNQALSATECTLEKTDKDKFVKPLEMSHKKSFFDKKRSERKWSHQDTFKCEAVNKQSFQTSQPFQVLKKKMNENLEISENSDDCQILTCPVCFRAQGCISLEALNKHVDECLDGPSISENFKMFSCSHVSATKVNKKENVPASSLCEKQDYEAHPKIKEISSVDCIALVDTIDNSSKAESIDALSNKHSKEECSSLPSKSFNIEHCHQNSSSTVSLENEDVGSFRQEYRQPYLCEVKTGQALVCPVCNVEQKTSDLTLFNVHVDVCLNK  804
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .-----------------------......hhhhhhhhhh--------------........hhhhhhhhhhhhhhhh...hhhhhhhh------------------hhhhhh-------------------------------hhhh.hhhh------------hhhhhhhhhhhhhhh.hhhhh--------------hhhhhhhhh-----------------------------------------------------hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------T------------K---------------------I----------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ba9 E  201 G-----------------------PHMHKKSFFDKKRSER--------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQV------------------VKYCTD-------------------------------LIEEKDLEK------------LDLVIKYMKRLMQQSVESVWN--------------MAFDFILDN-----------------------------------------------------VQVVLQQ 1242
                            |        -         -    |  207       217         -    | 1161      1171      1181        |-         -      1193  |      -         -         -    | 1202  |      -     |1210      1220     |   -         -|       |-         -         -         -         -         -  |      
                          201                     202            217           1156                              1190               1191 1196                            1197    1205         1206                1226           1227    1235                                                  1236      

Chain E from PDB  Type:PROTEIN  Length:104
 aligned with REV1_HUMAN | Q9UBZ9 from UniProtKB/Swiss-Prot  Length:1251

    Alignment length:184
                                  1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238    
          REV1_HUMAN   1059 NPLLHLKAAVKEKKRNKKKKTIGSPKRIQSPLNNKLLNSPAKTLPGACGSPQKLIDGFLKHEGPPAEKPLEELSASTSGVPGLSSLQSDPAGCVRPPAPNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhh-hhhhhh-------------------------------------------------------------------------------........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -T-------------K--------------------------------------------------------------------------------------I----------------V---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.23d  PDB: E:201-217 (gaps) UniProt: 1056-1128 [INCOMPLETE]     Exon 1.24a  PDB: E:1156-1181 UniProt: 1129-1181      ---------------------------------Exon 1.25b  PDB: E:1215-1242 Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------Exon 1.24e  PDB: E:1181-1215       --------------------------- Transcript 1 (2)
                4ba9 E  201 GPHMHKKSFFD-KKRSER-------------------------------------------------------------------------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
                                   210| |    | -         -         -         -         -         -         -         -      1158      1168      1178      1188      1198      1208      1218      1228      1238    
                                    211 |  217                                                                            1156                                                                                      
                                      212                                                                                                                                                                           

Chain F from PDB  Type:PROTEIN  Length:104
 aligned with POLK_HUMAN | Q9UBT6 from UniProtKB/Swiss-Prot  Length:870

    Alignment length:269
                                   545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795         
          POLK_HUMAN    536 GNQALSATECTLEKTDKDKFVKPLEMSHKKSFFDKKRSERKWSHQDTFKCEAVNKQSFQTSQPFQVLKKKMNENLEISENSDDCQILTCPVCFRAQGCISLEALNKHVDECLDGPSISENFKMFSCSHVSATKVNKKENVPASSLCEKQDYEAHPKIKEISSVDCIALVDTIDNSSKAESIDALSNKHSKEECSSLPSKSFNIEHCHQNSSSTVSLENEDVGSFRQEYRQPYLCEVKTGQALVCPVCNVEQKTSDLTLFNVHVDVCLNK  804
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .-----------------------......hhhhhhhhh.--------------........hhhhhhhhhhhhhhhh...hhhhhhhh------------------hhhhhh-------------------------------hhhh.hhhh------------hhhhhhhhhhhhhhh.hhhhh--------------hhhhhhhhh-----------------------------------------------------hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------T------------K---------------------I----------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ba9 F  201 G-----------------------PHMHKKSFFDKKRSER--------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQV------------------VKYCTD-------------------------------LIEEKDLEK------------LDLVIKYMKRLMQQSVESVWN--------------MAFDFILDN-----------------------------------------------------VQVVLQQ 1242
                            |        -         -    |  207       217         -    | 1161      1171      1181        |-         -      1193  |      -         -         -    | 1202  |      -     |1210      1220     |   -         -|       |-         -         -         -         -         -  |      
                          201                     202            217           1156                              1190               1191 1196                            1197    1205         1206                1226           1227    1235                                                  1236      

Chain F from PDB  Type:PROTEIN  Length:104
 aligned with REV1_HUMAN | Q9UBZ9 from UniProtKB/Swiss-Prot  Length:1251

    Alignment length:184
                                  1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238    
          REV1_HUMAN   1059 NPLLHLKAAVKEKKRNKKKKTIGSPKRIQSPLNNKLLNSPAKTLPGACGSPQKLIDGFLKHEGPPAEKPLEELSASTSGVPGLSSLQSDPAGCVRPPAPNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhh-hhhhh.-------------------------------------------------------------------------------........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -T-------------K--------------------------------------------------------------------------------------I----------------V---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.23d  PDB: F:201-217 (gaps) UniProt: 1056-1128 [INCOMPLETE]     Exon 1.24a  PDB: F:1156-1181 UniProt: 1129-1181      ---------------------------------Exon 1.25b  PDB: F:1215-1242 Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------Exon 1.24e  PDB: F:1181-1215       --------------------------- Transcript 1 (2)
                4ba9 F  201 GPHMHKKSFFD-KKRSER-------------------------------------------------------------------------------ASNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ 1242
                                   210| |    | -         -         -         -         -         -         -         -      1158      1168      1178      1188      1198      1208      1218      1228      1238    
                                    211 |  217                                                                            1156                                                                                      
                                      212                                                                                                                                                                           

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BA9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BA9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BA9)

(-) Gene Ontology  (22, 35)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (POLK_HUMAN | Q9UBT6)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003887    DNA-directed DNA polymerase activity    Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
    GO:0003684    damaged DNA binding    Interacting selectively and non-covalently with damaged DNA.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0071897    DNA biosynthetic process    The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0042276    error-prone translesion synthesis    The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across the lesion. This process does not remove the replication-blocking lesions and causes an increase in the endogenous mutation level. For example, in E. coli, a low fidelity DNA polymerase, pol V, copies lesions that block replication fork progress. This produces mutations specifically targeted to DNA template damage sites, but it can also produce mutations at undamaged sites.
    GO:0006297    nucleotide-excision repair, DNA gap filling    Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes.
    GO:0033683    nucleotide-excision repair, DNA incision    A process that results in the endonucleolytic cleavage of the damaged strand of DNA. The incision occurs at the junction of single-stranded DNA and double-stranded DNA that is formed when the DNA duplex is unwound.
    GO:0006296    nucleotide-excision repair, DNA incision, 5'-to lesion    The endonucleolytic cleavage of the damaged strand of DNA 5' to the site of damage. The incision occurs at the junction of single-stranded DNA and double-stranded DNA that is formed when the DNA duplex is unwound. The incision follows the incision formed 3' to the site of damage.
    GO:0006283    transcription-coupled nucleotide-excision repair    The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.
    GO:0019985    translesion synthesis    The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide.
cellular component
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain A,B,C,D,E,F   (REV1_HUMAN | Q9UBZ9)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003684    damaged DNA binding    Interacting selectively and non-covalently with damaged DNA.
    GO:0017125    deoxycytidyl transferase activity    Catalysis of the insertion of a dCMP residue opposite a template abasic site in DNA.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0071897    DNA biosynthetic process    The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0042276    error-prone translesion synthesis    The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across the lesion. This process does not remove the replication-blocking lesions and causes an increase in the endogenous mutation level. For example, in E. coli, a low fidelity DNA polymerase, pol V, copies lesions that block replication fork progress. This produces mutations specifically targeted to DNA template damage sites, but it can also produce mutations at undamaged sites.
    GO:0009411    response to UV    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers.
    GO:0019985    translesion synthesis    The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide.
cellular component
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLK_HUMAN | Q9UBT61t94 2lsi 2oh2 2w7o 2w7p 3in5 3pzp 4gk5 4u6p 4u7c 5t14
        REV1_HUMAN | Q9UBZ92ebw 2lsi 2lsk 2lsy 2n1g 3gqc 3vu7 4ext 4gk0 4gk5

(-) Related Entries Specified in the PDB File

1t94 CRYSTAL STRUCTURE OF THE CATALYTIC CORE OF HUMAN DNAPOLYMERASE KAPPA
2w7o STRUCTURE AND ACTIVITY OF BYPASS SYNTHESIS BY HUMAN DNA POLYMERASE KAPPA OPPOSITE THE 7,8-DIHYDRO-8- OXODEOXYGUANOSINE ADDUCT
2w7p STRUCTURE AND ACTIVITY OF BYPASS SYNTHESIS BY HUMAN DNA POLYMERASE KAPPA OPPOSITE THE 7,8-DIHYDRO-8- OXODEOXYGUANOSINE ADDUCT