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Title :   STRUCTURE OF HUMAN CERULOPLASMIN AT 2.6 A RESOLUTION

Authors :   V. R. Samygina, A. V. Sokolov, G. Bourenkov, V. B. Vasilyev, H. Bartunik

Date :   13 Apr 12 (Deposition) - 17 Apr 13 (Release) - 11 Sep 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym./Biol. Unit : A

Keywords :   Plastocyanin-Like Domains, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. R. Samygina, A. V. Sokolov, G. Bourenkov, M. V. Petoukhov, M. O. Pulina, E. T. Zakharova, V. B. Vasilyev, H. Bartunik, D. I. Svergu
Ceruloplasmin: Macromolecular Assemblies With Iron-Containing Acute Phase Proteins.
Plos One V. 8 67145 2013
PubMed-ID: 23843990 | Reference-DOI: 10.1371/JOURNAL.PONE.0067145

Molecule 1 - CERULOPLASMIN
	Chains	:	A
	EC Number	:	1.16.3.1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FERROXIDASE

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (7, 13)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	CU	6	Ligand/Ion	COPPER (II) ION
3	GOL	1	Ligand/Ion	GLYCEROL
4	NA	1	Ligand/Ion	SODIUM ION
5	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
6	O	1	Ligand/Ion	OXYGEN ATOM
7	OXY	1	Ligand/Ion	OXYGEN MOLECULE

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:119	BINDING SITE FOR RESIDUE NAG A 1101
02	AC2	SOFTWARE	HIS A:276 , CYS A:319 , HIS A:324 , LEU A:329	BINDING SITE FOR RESIDUE CU A 1102
03	AC3	SOFTWARE	HIS A:163 , HIS A:980 , HIS A:1020 , OXY A:1109	BINDING SITE FOR RESIDUE CU A 1103
04	AC4	SOFTWARE	HIS A:101 , HIS A:103 , HIS A:978 , HIS A:980 , O A:1108 , OXY A:1109	BINDING SITE FOR RESIDUE CU A 1104
05	AC5	SOFTWARE	HIS A:103 , HIS A:161 , HIS A:1022 , OXY A:1109	BINDING SITE FOR RESIDUE CU A 1105
06	AC6	SOFTWARE	HIS A:637 , CYS A:680 , THR A:682 , HIS A:685 , MET A:690	BINDING SITE FOR RESIDUE CU A 1106
07	AC7	SOFTWARE	LEU A:974 , HIS A:975 , CYS A:1021 , VAL A:1023 , HIS A:1026 , MET A:1031	BINDING SITE FOR RESIDUE CU A 1107
08	AC8	SOFTWARE	SER A:102 , HIS A:103 , TYR A:107 , GLY A:981 , CU A:1104 , HOH A:1204 , HOH A:1234	BINDING SITE FOR RESIDUE O A 1108
09	AC9	SOFTWARE	HIS A:101 , HIS A:103 , HIS A:161 , HIS A:163 , HIS A:978 , HIS A:980 , HIS A:1020 , HIS A:1022 , CU A:1103 , CU A:1104 , CU A:1105	BINDING SITE FOR RESIDUE OXY A 1109
10	BC1	SOFTWARE	LYS A:109 , GLN A:124 , ASP A:127 , ASP A:128 , HOH A:1242	BINDING SITE FOR RESIDUE CA A 1110
11	BC2	SOFTWARE	SER A:369 , ILE A:371 , ASN A:378	BINDING SITE FOR RESIDUE NAG A 1111
12	BC3	SOFTWARE	TYR A:36 , GLY A:45 , TYR A:48 , SER A:237	BINDING SITE FOR RESIDUE NA A 1112
13	BC4	SOFTWARE	TYR A:646 , TRP A:648 , ARG A:653 , ASN A:657	BINDING SITE FOR RESIDUE GOL A 1113

Asymmetric/Biological Unit

No.	Residues
1	A:155	-	A:181
2	A:257	-	A:338
3	A:515	-	A:541
4	A:618	-	A:699
5	A:855	-	A:881

Asymmetric/Biological Unit

No.	Residues
1	Asp A:19	-	His A:20
2	Gly A:21	-	Glu A:22
3	Lys A:183	-	Asp A:184
4	Gly A:282	-	Gln A:283
5	Cys A:338	-	Asn A:339
6	Lys A:340	-	Ser A:341
7	Asp A:345	-	Asn A:346
8	Arg A:701	-	Gln A:702

(no "SAP(SNP)/Variant" information available for 4ENZ)

(no "PROSITE Motif" information available for 4ENZ)

(no "Exon" information available for 4ENZ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:1029
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4enza1 A:1-192 automated matches                                                                                                                                                               d4enza2 A:193-338 automated matches                                                                                                               d4enza3 A:339-553 automated matches                                                                                                                                                                             d4enza4 A:554-705 automated matches                                                                                                                     d4enza5 A:706-884 automated matches                                                                                                                                                d4enza6 A:885-1040 automated matches                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee.................hhhhhh........eeeeeeeeee...........hhhhh.....eeee...eeeeeeee........ee.....hhhhh........hhhhhhhhh.....eeeeeee.............eeeeeee...hhhhhhhh..eeeeeee....ee..ee....eeeeeeeeeee.hhh.hhhhhhhhhh.hhhhh...hhhhhhhheeeee...........eee...eeeeeeee.......eeeee....eee..eee...ee....eeeeeee....eeeeeee.hhhhhh...eeeeeee..............eeeeeeeeeeeeeee....................hhhhhh........eeeeeeeee...............hhhhh.....eeee..eeeeeeeeee.......ee.....hhhhh...................eeeeeee.............eeeeeee...hhhhhhhhh.eeeeeee...............eeeee.eeeee.hhh.hhhhhhhhhh.hhhhh...hhhhhhhheeeee...........eee....eeeeee........eeeee....eee..eee.eeee....eeeeee.....eeeeeee.hhhhhhh..eeeeeee.............eeeeeeeeeeeeeee....hhhhhhhhhhhh.................eeeeeeeeee...........hhhhhhhh.....eeee..eeeeeeeee........ee.................eeeeeee.hhhhh.......eeeeeee...hhhhhhhh..eeeeeee........eeeeeeeeeeee.hhh.hhhhhhhhhh.hhhhh...hhhhhhhheeeee...........eee...eeeeeeee.......eeeee....eeehhhhheee.eeee....eeeeee.....eeeeeee.hhhhhhh..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4enz A    1 KEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDNIRGKHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTYYSPNVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPYNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQN 1040
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470    || 487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    475|                                                                                                                                                                                                                                                                                                                                                                                                               885|                                                                                                                                                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     483                                                                                                                                                                                                                                                                                                                                                                                                                890

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Cupredoxin-like (545)

Superfamily: Cupredoxins (543)

Family: automated matches (57)

Protein domain: automated matches (57)

Human (Homo sapiens) [TaxId: 9606] (5)

1a	d4enza1	A:1-192
1b	d4enza2	A:193-338
1c	d4enza3	A:339-553
1d	d4enza4	A:554-705
1e	d4enza5	A:706-884
1f	d4enza6	A:885-1040

(no "CATH Domain" information available for 4ENZ)

(no "Pfam Domain" information available for 4ENZ)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Arg A:701 - Gln A:702	[ RasMol ]
		Asp A:19 - His A:20	[ RasMol ]
		Asp A:345 - Asn A:346	[ RasMol ]
		Cys A:338 - Asn A:339	[ RasMol ]
		Gly A:21 - Glu A:22	[ RasMol ]
		Gly A:282 - Gln A:283	[ RasMol ]
		Lys A:183 - Asp A:184	[ RasMol ]
		Lys A:340 - Ser A:341	[ RasMol ]

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	CERU_HUMAN \| P00450	:	1kcw 2j5w 4ejx

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 13)

Sites (13, 13)

SS Bonds (5, 5)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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