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Asym. Unit
Info
Asym.Unit (365 KB)
Biol.Unit 1 (357 KB)
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(1)
Title
:
STRUCTURE OF HUMAN CERULOPLASMIN AT 2.6 A RESOLUTION
Authors
:
V. R. Samygina, A. V. Sokolov, G. Bourenkov, V. B. Vasilyev, H. Bartunik
Date
:
13 Apr 12 (Deposition) - 17 Apr 13 (Release) - 11 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Plastocyanin-Like Domains, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. R. Samygina, A. V. Sokolov, G. Bourenkov, M. V. Petoukhov, M. O. Pulina, E. T. Zakharova, V. B. Vasilyev, H. Bartunik, D. I. Svergu
Ceruloplasmin: Macromolecular Assemblies With Iron-Containing Acute Phase Proteins.
Plos One V. 8 67145 2013
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Hetero Components
(7, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
3a: GLYCEROL (GOLa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4a: SODIUM ION (NAa)
7a: OXYGEN MOLECULE (OXYa)
6a: OXYGEN ATOM (Oa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
CU
6
Ligand/Ion
COPPER (II) ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
NA
1
Ligand/Ion
SODIUM ION
5
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
O
1
Ligand/Ion
OXYGEN ATOM
7
OXY
1
Ligand/Ion
OXYGEN MOLECULE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:119
BINDING SITE FOR RESIDUE NAG A 1101
02
AC2
SOFTWARE
HIS A:276 , CYS A:319 , HIS A:324 , LEU A:329
BINDING SITE FOR RESIDUE CU A 1102
03
AC3
SOFTWARE
HIS A:163 , HIS A:980 , HIS A:1020 , OXY A:1109
BINDING SITE FOR RESIDUE CU A 1103
04
AC4
SOFTWARE
HIS A:101 , HIS A:103 , HIS A:978 , HIS A:980 , O A:1108 , OXY A:1109
BINDING SITE FOR RESIDUE CU A 1104
05
AC5
SOFTWARE
HIS A:103 , HIS A:161 , HIS A:1022 , OXY A:1109
BINDING SITE FOR RESIDUE CU A 1105
06
AC6
SOFTWARE
HIS A:637 , CYS A:680 , THR A:682 , HIS A:685 , MET A:690
BINDING SITE FOR RESIDUE CU A 1106
07
AC7
SOFTWARE
LEU A:974 , HIS A:975 , CYS A:1021 , VAL A:1023 , HIS A:1026 , MET A:1031
BINDING SITE FOR RESIDUE CU A 1107
08
AC8
SOFTWARE
SER A:102 , HIS A:103 , TYR A:107 , GLY A:981 , CU A:1104 , HOH A:1204 , HOH A:1234
BINDING SITE FOR RESIDUE O A 1108
09
AC9
SOFTWARE
HIS A:101 , HIS A:103 , HIS A:161 , HIS A:163 , HIS A:978 , HIS A:980 , HIS A:1020 , HIS A:1022 , CU A:1103 , CU A:1104 , CU A:1105
BINDING SITE FOR RESIDUE OXY A 1109
10
BC1
SOFTWARE
LYS A:109 , GLN A:124 , ASP A:127 , ASP A:128 , HOH A:1242
BINDING SITE FOR RESIDUE CA A 1110
11
BC2
SOFTWARE
SER A:369 , ILE A:371 , ASN A:378
BINDING SITE FOR RESIDUE NAG A 1111
12
BC3
SOFTWARE
TYR A:36 , GLY A:45 , TYR A:48 , SER A:237
BINDING SITE FOR RESIDUE NA A 1112
13
BC4
SOFTWARE
TYR A:646 , TRP A:648 , ARG A:653 , ASN A:657
BINDING SITE FOR RESIDUE GOL A 1113
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4enza1 (A:1-192)
1b: SCOP_d4enza2 (A:193-338)
1c: SCOP_d4enza3 (A:339-553)
1d: SCOP_d4enza4 (A:554-705)
1e: SCOP_d4enza5 (A:706-884)
1f: SCOP_d4enza6 (A:885-1040)
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Protein Domains
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d4enza1
A:1-192
1b
d4enza2
A:193-338
1c
d4enza3
A:339-553
1d
d4enza4
A:554-705
1e
d4enza5
A:706-884
1f
d4enza6
A:885-1040
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (365 KB)
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