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(-) Description

Title :  2.2 ANGSTROM CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE FROM VIBRIO CHOLERAE IN COMPLEX WITH ZINC AND URIDINE
 
Authors :  G. Minasov, Z. Wawrzak, T. Skarina, Y. Wang, S. Grimshaw, L. Papazisi, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date :  30 Mar 12  (Deposition) - 02 May 12  (Release) - 02 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Cytidine Deaminase, Ump Synthesis, Zn Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, Z. Wawrzak, T. Skarina, Y. Wang, S. Grimshaw, L. Papazisi, A. Savchenko, W. F. Anderson
2. 2 Angstrom Crystal Structure Of Cytidine Deaminase From Vibrio Cholerae In Complex With Zinc And Uridine.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYTIDINE DEAMINASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.5.4.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-GOLD(DE3)PLYSS AG
    Expression System Taxid: 866768
    Expression System Vector Type: PLASMID
    Gene: CDD, VC_1231
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 666
    Synonym: CYTIDINE AMINOHYDROLASE, CDA

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 114)

Asymmetric Unit (5, 114)
No.NameCountTypeFull Name
1ACT9Ligand/IonACETATE ION
2MG1Ligand/IonMAGNESIUM ION
3MSE88Mod. Amino AcidSELENOMETHIONINE
4URI8Ligand/IonURIDINE
5ZN8Ligand/IonZINC ION
Biological Unit 1 (3, 26)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MG-1Ligand/IonMAGNESIUM ION
3MSE22Mod. Amino AcidSELENOMETHIONINE
4URI2Ligand/IonURIDINE
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 26)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MG-1Ligand/IonMAGNESIUM ION
3MSE22Mod. Amino AcidSELENOMETHIONINE
4URI2Ligand/IonURIDINE
5ZN-1Ligand/IonZINC ION
Biological Unit 3 (3, 28)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2MG-1Ligand/IonMAGNESIUM ION
3MSE22Mod. Amino AcidSELENOMETHIONINE
4URI2Ligand/IonURIDINE
5ZN-1Ligand/IonZINC ION
Biological Unit 4 (3, 25)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MG-1Ligand/IonMAGNESIUM ION
3MSE22Mod. Amino AcidSELENOMETHIONINE
4URI2Ligand/IonURIDINE
5ZN-1Ligand/IonZINC ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:102 , CYS A:129 , CYS A:132 , URI A:302BINDING SITE FOR RESIDUE ZN A 301
02AC2SOFTWAREPHE A:71 , VAL A:73 , ASN A:89 , GLU A:91 , THR A:100 , VAL A:101 , HIS A:102 , ALA A:103 , GLU A:104 , PRO A:128 , CYS A:129 , ZN A:301 , HOH A:514 , ALA B:232BINDING SITE FOR RESIDUE URI A 302
03AC3SOFTWAREGLU A:253 , PHE A:255BINDING SITE FOR RESIDUE ACT A 303
04AC4SOFTWAREHOH B:499 , HOH B:604 , HOH B:605 , HOH E:551 , HOH E:552 , HOH F:559BINDING SITE FOR RESIDUE MG B 301
05AC5SOFTWAREHIS B:102 , CYS B:129 , CYS B:132 , URI B:303BINDING SITE FOR RESIDUE ZN B 302
06AC6SOFTWAREALA A:232 , ALA A:233 , PHE B:71 , VAL B:73 , ASN B:89 , GLU B:91 , THR B:100 , VAL B:101 , HIS B:102 , ALA B:103 , GLU B:104 , PRO B:128 , CYS B:129 , ZN B:302BINDING SITE FOR RESIDUE URI B 303
07AC7SOFTWARETYR B:65 , GLU B:253 , PHE B:255BINDING SITE FOR RESIDUE ACT B 304
08AC8SOFTWAREHIS C:102 , CYS C:129 , CYS C:132 , URI C:302BINDING SITE FOR RESIDUE ZN C 301
09AC9SOFTWAREPHE C:71 , ASN C:89 , GLU C:91 , THR C:100 , VAL C:101 , HIS C:102 , ALA C:103 , GLU C:104 , PRO C:128 , CYS C:129 , ZN C:301 , ALA D:232 , ALA D:233BINDING SITE FOR RESIDUE URI C 302
10BC1SOFTWAREHIS D:102 , CYS D:129 , CYS D:132 , URI D:302BINDING SITE FOR RESIDUE ZN D 301
11BC2SOFTWAREPHE C:165 , ALA C:232 , ALA C:233 , PHE C:234 , PHE D:71 , VAL D:73 , ASN D:89 , GLU D:91 , THR D:100 , VAL D:101 , HIS D:102 , ALA D:103 , GLU D:104 , PRO D:128 , CYS D:129 , ZN D:301BINDING SITE FOR RESIDUE URI D 302
12BC3SOFTWAREARG B:198 , GLN D:40BINDING SITE FOR RESIDUE ACT D 303
13BC4SOFTWARETYR D:65 , GLU D:253 , PHE D:255BINDING SITE FOR RESIDUE ACT D 304
14BC5SOFTWAREHIS E:102 , CYS E:129 , CYS E:132 , URI E:302BINDING SITE FOR RESIDUE ZN E 301
15BC6SOFTWAREPHE E:71 , VAL E:73 , ASN E:89 , GLU E:91 , THR E:100 , HIS E:102 , ALA E:103 , GLU E:104 , PRO E:128 , CYS E:129 , ZN E:301 , ALA F:232 , ALA F:233 , PHE F:234BINDING SITE FOR RESIDUE URI E 302
16BC7SOFTWAREGLU E:253 , PHE E:255BINDING SITE FOR RESIDUE ACT E 303
17BC8SOFTWAREARG E:4 , ALA E:66 , GLU E:70 , TYR E:72BINDING SITE FOR RESIDUE ACT E 304
18BC9SOFTWAREASP E:51 , LYS E:151 , ARG E:152BINDING SITE FOR RESIDUE ACT E 305
19CC1SOFTWAREHIS F:102 , CYS F:129 , CYS F:132 , URI F:302BINDING SITE FOR RESIDUE ZN F 301
20CC2SOFTWAREALA E:232 , ALA E:233 , PHE F:71 , VAL F:73 , ASN F:89 , GLU F:91 , THR F:100 , VAL F:101 , HIS F:102 , ALA F:103 , GLU F:104 , PRO F:128 , CYS F:129 , ZN F:301BINDING SITE FOR RESIDUE URI F 302
21CC3SOFTWARETYR F:65 , GLU F:253 , PHE F:255BINDING SITE FOR RESIDUE ACT F 303
22CC4SOFTWAREHIS G:102 , CYS G:129 , CYS G:132 , URI G:302BINDING SITE FOR RESIDUE ZN G 301
23CC5SOFTWAREPHE G:71 , VAL G:73 , ASN G:89 , GLU G:91 , THR G:100 , VAL G:101 , HIS G:102 , ALA G:103 , GLU G:104 , SER G:127 , PRO G:128 , CYS G:129 , ZN G:301 , ALA H:232 , ALA H:233 , PHE H:234BINDING SITE FOR RESIDUE URI G 302
24CC6SOFTWAREGLU G:253 , PHE G:255BINDING SITE FOR RESIDUE ACT G 303
25CC7SOFTWAREHIS H:102 , CYS H:129 , CYS H:132 , URI H:302BINDING SITE FOR RESIDUE ZN H 301
26CC8SOFTWAREALA G:232 , PHE G:234 , ASN H:89 , GLU H:91 , THR H:100 , VAL H:101 , HIS H:102 , ALA H:103 , GLU H:104 , PRO H:128 , CYS H:129 , ZN H:301BINDING SITE FOR RESIDUE URI H 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EG2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EG2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EG2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EG2)

(-) Exons   (0, 0)

(no "Exon" information available for 4EG2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4eg2a1 A:-1-150 automated matches                                                                                                                      d4eg2a2 A:151-295 automated matches                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh...hhhhhhhhhh......eehhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........eeeeee....eeeee.......hhhhh.hhhhhhhhhhhhh....eeeeee....hhhhhhhhh........eee......eehhhhh....hhhhhh..................hhhhhhhhhhhh..........eeeeeee....eeeee...........hhhhhhhhhhhhh..hhh.eeeeeeee.......hhhhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eg2 A  -1 NAmRNRIEQALQQmPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANmEFTGAQLGQTVHAEQCAISHAWmKGEKGVADITINFSPCGHCRQFmNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLmSPVNHGKTSDDDEELIQQALRAmNISHSPYTQNFSGVALKmRSGAIYLGAYAENAAFNPSLPPLQVALAQAmmmGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL 295
                              |      8   |    18        28        38        48        58        68        78        88 |      98       108    |  118       128       138       148       158       168       178       188       198 |     208       218       228       238       248|||    258       268       278       288       
                              |         12-MSE                                                                        90-MSE                113-MSE                136-MSE                                  177-MSE                200-MSE           218-MSE                        249-MSE                                          
                              1-MSE                                                                                                                                                                                                                                                  250-MSE                                         
                                                                                                                                                                                                                                                                                      251-MSE                                        


Chain B from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4eg2b1 B:-1-150 automated matches                                                                                                                      d4eg2b2 B:151-295 automated matches                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....hhhhhhhhhh......eehhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........eeeeee....eeeee.......hhhhh.hhhhhhhhhhhhh....eeeeee....hhhhhhhhh........eee......eehhhhh....hhhhhh..................hhhhhhhhhhhh..........eeeeeee....eeeee...........hhhhhhhhhhhhh..hhh.eeeeeeeee......hhhhhhhhhhhhh....eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eg2 B  -1 NAmRNRIEQALQQmPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANmEFTGAQLGQTVHAEQCAISHAWmKGEKGVADITINFSPCGHCRQFmNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLmSPVNHGKTSDDDEELIQQALRAmNISHSPYTQNFSGVALKmRSGAIYLGAYAENAAFNPSLPPLQVALAQAmmmGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL 295
                              |      8   |    18        28        38        48        58        68        78        88 |      98       108    |  118       128       138       148       158       168       178       188       198 |     208       218       228       238       248|||    258       268       278       288       
                              1-MSE     12-MSE                                                                        90-MSE                113-MSE                136-MSE                                  177-MSE                200-MSE           218-MSE                        249-MSE                                          
                                                                                                                                                                                                                                                                                     250-MSE                                         
                                                                                                                                                                                                                                                                                      251-MSE                                        


Chain C from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4eg2c1 C:0-150 automated matches                                                                                                                      d4eg2c2 C:151-295 automated matches                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...hhhhhhhhhh......eehhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........eeeeee....eeeee.......hhhhh.hhhhhhhhhhhhh....eeeeee....hhhhhhhhh........eee......eehhhhh....hhhhhh..................hhhhhhhhhhhh..........eeeeeee....eeeee...........hhhhhhhhhhhhh..hhh.eeeeeeeee......hhhhhhhhhhhhh....eeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eg2 C   0 AmRNRIEQALQQmPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANmEFTGAQLGQTVHAEQCAISHAWmKGEKGVADITINFSPCGHCRQFmNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLmSPVNHGKTSDDDEELIQQALRAmNISHSPYTQNFSGVALKmRSGAIYLGAYAENAAFNPSLPPLQVALAQAmmmGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL 295
                             |       9  |     19        29        39        49        59        69        79        89|       99       109   |   119       129      |139       149       159       169       179       189       199|      209       219       229       239       249||     259       269       279       289      
                             1-MSE     12-MSE                                                                        90-MSE                113-MSE                136-MSE                                  177-MSE                200-MSE           218-MSE                        249-MSE                                          
                                                                                                                                                                                                                                                                                    250-MSE                                         
                                                                                                                                                                                                                                                                                     251-MSE                                        


Chain D from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4eg2d1 D:-1-150 automated matches                                                                                                                      d4eg2d2 D:151-295 automated matches                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....hhhhhhhhhh......eehhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........eeeeee....eeeee.......hhhhh.hhhhhhhhhhhhh....eeeeee....hhhhhhhhh........eee......eehhhhh....hhhhhh..................hhhhhhhhhhhh..........eeeeeee....eeeee...........hhhhhhhhhhhhh..hhh.eeeeeeeee......hhhhhhhhhhhhh....eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eg2 D  -1 NAmRNRIEQALQQmPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANmEFTGAQLGQTVHAEQCAISHAWmKGEKGVADITINFSPCGHCRQFmNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLmSPVNHGKTSDDDEELIQQALRAmNISHSPYTQNFSGVALKmRSGAIYLGAYAENAAFNPSLPPLQVALAQAmmmGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL 295
                              |      8   |    18        28        38        48        58        68        78        88 |      98       108    |  118       128       138       148       158       168       178       188       198 |     208       218       228       238       248|||    258       268       278       288       
                              1-MSE     12-MSE                                                                        90-MSE                113-MSE                136-MSE                                  177-MSE                200-MSE           218-MSE                        249-MSE                                          
                                                                                                                                                                                                                                                                                     250-MSE                                         
                                                                                                                                                                                                                                                                                      251-MSE                                        


Chain E from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4eg2e1 E:-1-150 automated matches                                                                                                                      d4eg2e2 E:151-295 automated matches                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....hhhhhhhhhh......eehhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........eeeeee....eeeee.......hhhhh.hhhhhhhhhhhhh....eeeeee....hhhhhhhhh........eee......eehhhhh....hhhhhh..................hhhhhhhhhhhh..........eeeeeee....eeeee...........hhhhhhhhhhhhh..hhh.eeeeeeeee......hhhhhhhhhhhhh....eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eg2 E  -1 NAmRNRIEQALQQmPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANmEFTGAQLGQTVHAEQCAISHAWmKGEKGVADITINFSPCGHCRQFmNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLmSPVNHGKTSDDDEELIQQALRAmNISHSPYTQNFSGVALKmRSGAIYLGAYAENAAFNPSLPPLQVALAQAmmmGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL 295
                              |      8   |    18        28        38        48        58        68        78        88 |      98       108    |  118       128       138       148       158       168       178       188       198 |     208       218       228       238       248|||    258       268       278       288       
                              1-MSE     12-MSE                                                                        90-MSE                113-MSE                136-MSE                                  177-MSE                200-MSE           218-MSE                        249-MSE                                          
                                                                                                                                                                                                                                                                                     250-MSE                                         
                                                                                                                                                                                                                                                                                      251-MSE                                        


Chain F from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4eg2f1 F:0-150 automated matches                                                                                                                      d4eg2f2 F:151-295 automated matches                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....hhhhhhhhhh......eehhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........eeeeee....eeeee.......hhhhh.hhhhhhhhhhhhh....eeeee.....hhhhhhhhh........eee......eehhhhh....hhhhhh..................hhhhhhhhhhhh..........eeeeeee....eeeee...........hhhhhhhhhhhh...hhh.eeeeeeee.......hhhhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eg2 F   0 AmRNRIEQALQQmPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANmEFTGAQLGQTVHAEQCAISHAWmKGEKGVADITINFSPCGHCRQFmNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLmSPVNHGKTSDDDEELIQQALRAmNISHSPYTQNFSGVALKmRSGAIYLGAYAENAAFNPSLPPLQVALAQAmmmGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL 295
                             |       9  |     19        29        39        49        59        69        79        89|       99       109   |   119       129      |139       149       159       169       179       189       199|      209       219       229       239       249||     259       269       279       289      
                             1-MSE     12-MSE                                                                        90-MSE                113-MSE                136-MSE                                  177-MSE                200-MSE           218-MSE                        249-MSE                                          
                                                                                                                                                                                                                                                                                    250-MSE                                         
                                                                                                                                                                                                                                                                                     251-MSE                                        


Chain G from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4eg2g1 G:-1-150 automated matches                                                                                                                      d4eg2g2 G:151-295 automated matches                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....hhhhhhhhhh......eehhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........eeeeee....eeeee.......hhhhh.hhhhhhhhhhhhh....eeeeee....hhhhhhhhh........eee......eehhhhh............................hhhhhhhhhhhh...........eeeeee....eeeee...........hhhhhhhhhhhhh..hhh.eeeeeeeee......hhhhhhhhhhhhh....eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eg2 G  -1 NAmRNRIEQALQQmPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANmEFTGAQLGQTVHAEQCAISHAWmKGEKGVADITINFSPCGHCRQFmNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLmSPVNHGKTSDDDEELIQQALRAmNISHSPYTQNFSGVALKmRSGAIYLGAYAENAAFNPSLPPLQVALAQAmmmGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL 295
                              |      8   |    18        28        38        48        58        68        78        88 |      98       108    |  118       128       138       148       158       168       178       188       198 |     208       218       228       238       248|||    258       268       278       288       
                              1-MSE     12-MSE                                                                        90-MSE                113-MSE                136-MSE                                  177-MSE                200-MSE           218-MSE                        249-MSE                                          
                                                                                                                                                                                                                                                                                     250-MSE                                         
                                                                                                                                                                                                                                                                                      251-MSE                                        


Chain H from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4eg2h1 H:-1-150 automated matches                                                                                                                      d4eg2h2 H:151-295 automated matches                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....hhhhhhhhhh......eehhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........eeeeee....eeeee.......hhhhh.hhhhhhhhhhhhh....eeeeee....hhhhhhhhh........eee......eehhhhh....hhhhhh..................hhhhhhhhhhhh..........eeeeeee....eeeee...........hhhhhhhhhhhhh..hhh.eeeeeeeee......hhhhhhhhhhhhh....eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eg2 H  -1 NAmRNRIEQALQQmPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANmEFTGAQLGQTVHAEQCAISHAWmKGEKGVADITINFSPCGHCRQFmNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLmSPVNHGKTSDDDEELIQQALRAmNISHSPYTQNFSGVALKmRSGAIYLGAYAENAAFNPSLPPLQVALAQAmmmGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL 295
                              |      8   |    18        28        38        48        58        68        78        88 |      98       108    |  118       128       138       148       158       168       178       188       198 |     208       218       228       238       248|||    258       268       278       288       
                              1-MSE     12-MSE                                                                        90-MSE                113-MSE                136-MSE                                  177-MSE                200-MSE           218-MSE                        249-MSE                                          
                                                                                                                                                                                                                                                                                     250-MSE                                         
                                                                                                                                                                                                                                                                                      251-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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 Classification and Annotation

(-) SCOP Domains  (1, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: Cytidine deaminase-like (78)
(-)
Superfamily: Cytidine deaminase-like (76)
(-)
Family: automated matches (11)
(-)
Protein domain: automated matches (11)
(-)
Vibrio cholerae [TaxId: 666] (1)
1ad4eg2a1A:-1-150
1bd4eg2a2A:151-295
1cd4eg2f1F:0-150
1dd4eg2f2F:151-295
1ed4eg2g1G:-1-150
1fd4eg2g2G:151-295
1gd4eg2h1H:-1-150
1hd4eg2h2H:151-295
1id4eg2b1B:-1-150
1jd4eg2b2B:151-295
1kd4eg2c1C:0-150
1ld4eg2c2C:151-295
1md4eg2d1D:-1-150
1nd4eg2d2D:151-295
1od4eg2e1E:-1-150
1pd4eg2e2E:151-295

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EG2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EG2)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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  4eg2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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