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4EG2
Asym. Unit
Info
Asym.Unit (830 KB)
Biol.Unit 1 (211 KB)
Biol.Unit 2 (210 KB)
Biol.Unit 3 (207 KB)
Biol.Unit 4 (206 KB)
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(1)
Title
:
2.2 ANGSTROM CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE FROM VIBRIO CHOLERAE IN COMPLEX WITH ZINC AND URIDINE
Authors
:
G. Minasov, Z. Wawrzak, T. Skarina, Y. Wang, S. Grimshaw, L. Papazisi, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
30 Mar 12 (Deposition) - 02 May 12 (Release) - 02 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Cytidine Deaminase, Ump Synthesis, Zn Binding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, Z. Wawrzak, T. Skarina, Y. Wang, S. Grimshaw, L. Papazisi, A. Savchenko, W. F. Anderson
2. 2 Angstrom Crystal Structure Of Cytidine Deaminase From Vibrio Cholerae In Complex With Zinc And Uridine.
To Be Published
[
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Hetero Components
(5, 114)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
2a: MAGNESIUM ION (MGa)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3aw: SELENOMETHIONINE (MSEaw)
3ax: SELENOMETHIONINE (MSEax)
3ay: SELENOMETHIONINE (MSEay)
3az: SELENOMETHIONINE (MSEaz)
3b: SELENOMETHIONINE (MSEb)
3ba: SELENOMETHIONINE (MSEba)
3bb: SELENOMETHIONINE (MSEbb)
3bc: SELENOMETHIONINE (MSEbc)
3bd: SELENOMETHIONINE (MSEbd)
3be: SELENOMETHIONINE (MSEbe)
3bf: SELENOMETHIONINE (MSEbf)
3bg: SELENOMETHIONINE (MSEbg)
3bh: SELENOMETHIONINE (MSEbh)
3bi: SELENOMETHIONINE (MSEbi)
3bj: SELENOMETHIONINE (MSEbj)
3bk: SELENOMETHIONINE (MSEbk)
3bl: SELENOMETHIONINE (MSEbl)
3bm: SELENOMETHIONINE (MSEbm)
3bn: SELENOMETHIONINE (MSEbn)
3bo: SELENOMETHIONINE (MSEbo)
3bp: SELENOMETHIONINE (MSEbp)
3bq: SELENOMETHIONINE (MSEbq)
3br: SELENOMETHIONINE (MSEbr)
3bs: SELENOMETHIONINE (MSEbs)
3bt: SELENOMETHIONINE (MSEbt)
3bu: SELENOMETHIONINE (MSEbu)
3bv: SELENOMETHIONINE (MSEbv)
3bw: SELENOMETHIONINE (MSEbw)
3bx: SELENOMETHIONINE (MSEbx)
3by: SELENOMETHIONINE (MSEby)
3bz: SELENOMETHIONINE (MSEbz)
3c: SELENOMETHIONINE (MSEc)
3ca: SELENOMETHIONINE (MSEca)
3cb: SELENOMETHIONINE (MSEcb)
3cc: SELENOMETHIONINE (MSEcc)
3cd: SELENOMETHIONINE (MSEcd)
3ce: SELENOMETHIONINE (MSEce)
3cf: SELENOMETHIONINE (MSEcf)
3cg: SELENOMETHIONINE (MSEcg)
3ch: SELENOMETHIONINE (MSEch)
3ci: SELENOMETHIONINE (MSEci)
3cj: SELENOMETHIONINE (MSEcj)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: URIDINE (URIa)
4b: URIDINE (URIb)
4c: URIDINE (URIc)
4d: URIDINE (URId)
4e: URIDINE (URIe)
4f: URIDINE (URIf)
4g: URIDINE (URIg)
4h: URIDINE (URIh)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
9
Ligand/Ion
ACETATE ION
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
MSE
88
Mod. Amino Acid
SELENOMETHIONINE
4
URI
8
Ligand/Ion
URIDINE
5
ZN
8
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:102 , CYS A:129 , CYS A:132 , URI A:302
BINDING SITE FOR RESIDUE ZN A 301
02
AC2
SOFTWARE
PHE A:71 , VAL A:73 , ASN A:89 , GLU A:91 , THR A:100 , VAL A:101 , HIS A:102 , ALA A:103 , GLU A:104 , PRO A:128 , CYS A:129 , ZN A:301 , HOH A:514 , ALA B:232
BINDING SITE FOR RESIDUE URI A 302
03
AC3
SOFTWARE
GLU A:253 , PHE A:255
BINDING SITE FOR RESIDUE ACT A 303
04
AC4
SOFTWARE
HOH B:499 , HOH B:604 , HOH B:605 , HOH E:551 , HOH E:552 , HOH F:559
BINDING SITE FOR RESIDUE MG B 301
05
AC5
SOFTWARE
HIS B:102 , CYS B:129 , CYS B:132 , URI B:303
BINDING SITE FOR RESIDUE ZN B 302
06
AC6
SOFTWARE
ALA A:232 , ALA A:233 , PHE B:71 , VAL B:73 , ASN B:89 , GLU B:91 , THR B:100 , VAL B:101 , HIS B:102 , ALA B:103 , GLU B:104 , PRO B:128 , CYS B:129 , ZN B:302
BINDING SITE FOR RESIDUE URI B 303
07
AC7
SOFTWARE
TYR B:65 , GLU B:253 , PHE B:255
BINDING SITE FOR RESIDUE ACT B 304
08
AC8
SOFTWARE
HIS C:102 , CYS C:129 , CYS C:132 , URI C:302
BINDING SITE FOR RESIDUE ZN C 301
09
AC9
SOFTWARE
PHE C:71 , ASN C:89 , GLU C:91 , THR C:100 , VAL C:101 , HIS C:102 , ALA C:103 , GLU C:104 , PRO C:128 , CYS C:129 , ZN C:301 , ALA D:232 , ALA D:233
BINDING SITE FOR RESIDUE URI C 302
10
BC1
SOFTWARE
HIS D:102 , CYS D:129 , CYS D:132 , URI D:302
BINDING SITE FOR RESIDUE ZN D 301
11
BC2
SOFTWARE
PHE C:165 , ALA C:232 , ALA C:233 , PHE C:234 , PHE D:71 , VAL D:73 , ASN D:89 , GLU D:91 , THR D:100 , VAL D:101 , HIS D:102 , ALA D:103 , GLU D:104 , PRO D:128 , CYS D:129 , ZN D:301
BINDING SITE FOR RESIDUE URI D 302
12
BC3
SOFTWARE
ARG B:198 , GLN D:40
BINDING SITE FOR RESIDUE ACT D 303
13
BC4
SOFTWARE
TYR D:65 , GLU D:253 , PHE D:255
BINDING SITE FOR RESIDUE ACT D 304
14
BC5
SOFTWARE
HIS E:102 , CYS E:129 , CYS E:132 , URI E:302
BINDING SITE FOR RESIDUE ZN E 301
15
BC6
SOFTWARE
PHE E:71 , VAL E:73 , ASN E:89 , GLU E:91 , THR E:100 , HIS E:102 , ALA E:103 , GLU E:104 , PRO E:128 , CYS E:129 , ZN E:301 , ALA F:232 , ALA F:233 , PHE F:234
BINDING SITE FOR RESIDUE URI E 302
16
BC7
SOFTWARE
GLU E:253 , PHE E:255
BINDING SITE FOR RESIDUE ACT E 303
17
BC8
SOFTWARE
ARG E:4 , ALA E:66 , GLU E:70 , TYR E:72
BINDING SITE FOR RESIDUE ACT E 304
18
BC9
SOFTWARE
ASP E:51 , LYS E:151 , ARG E:152
BINDING SITE FOR RESIDUE ACT E 305
19
CC1
SOFTWARE
HIS F:102 , CYS F:129 , CYS F:132 , URI F:302
BINDING SITE FOR RESIDUE ZN F 301
20
CC2
SOFTWARE
ALA E:232 , ALA E:233 , PHE F:71 , VAL F:73 , ASN F:89 , GLU F:91 , THR F:100 , VAL F:101 , HIS F:102 , ALA F:103 , GLU F:104 , PRO F:128 , CYS F:129 , ZN F:301
BINDING SITE FOR RESIDUE URI F 302
21
CC3
SOFTWARE
TYR F:65 , GLU F:253 , PHE F:255
BINDING SITE FOR RESIDUE ACT F 303
22
CC4
SOFTWARE
HIS G:102 , CYS G:129 , CYS G:132 , URI G:302
BINDING SITE FOR RESIDUE ZN G 301
23
CC5
SOFTWARE
PHE G:71 , VAL G:73 , ASN G:89 , GLU G:91 , THR G:100 , VAL G:101 , HIS G:102 , ALA G:103 , GLU G:104 , SER G:127 , PRO G:128 , CYS G:129 , ZN G:301 , ALA H:232 , ALA H:233 , PHE H:234
BINDING SITE FOR RESIDUE URI G 302
24
CC6
SOFTWARE
GLU G:253 , PHE G:255
BINDING SITE FOR RESIDUE ACT G 303
25
CC7
SOFTWARE
HIS H:102 , CYS H:129 , CYS H:132 , URI H:302
BINDING SITE FOR RESIDUE ZN H 301
26
CC8
SOFTWARE
ALA G:232 , PHE G:234 , ASN H:89 , GLU H:91 , THR H:100 , VAL H:101 , HIS H:102 , ALA H:103 , GLU H:104 , PRO H:128 , CYS H:129 , ZN H:301
BINDING SITE FOR RESIDUE URI H 302
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d4eg2a1 (A:-1-150)
1b: SCOP_d4eg2a2 (A:151-295)
1c: SCOP_d4eg2f1 (F:0-150)
1d: SCOP_d4eg2f2 (F:151-295)
1e: SCOP_d4eg2g1 (G:-1-150)
1f: SCOP_d4eg2g2 (G:151-295)
1g: SCOP_d4eg2h1 (H:-1-150)
1h: SCOP_d4eg2h2 (H:151-295)
1i: SCOP_d4eg2b1 (B:-1-150)
1j: SCOP_d4eg2b2 (B:151-295)
1k: SCOP_d4eg2c1 (C:0-150)
1l: SCOP_d4eg2c2 (C:151-295)
1m: SCOP_d4eg2d1 (D:-1-150)
1n: SCOP_d4eg2d2 (D:151-295)
1o: SCOP_d4eg2e1 (E:-1-150)
1p: SCOP_d4eg2e2 (E:151-295)
View:
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Classes
(
)
(
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Folds
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(
)
Superfamilies
(
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(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Cytidine deaminase-like
(78)
Superfamily
:
Cytidine deaminase-like
(76)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Vibrio cholerae [TaxId: 666]
(1)
1a
d4eg2a1
A:-1-150
1b
d4eg2a2
A:151-295
1c
d4eg2f1
F:0-150
1d
d4eg2f2
F:151-295
1e
d4eg2g1
G:-1-150
1f
d4eg2g2
G:151-295
1g
d4eg2h1
H:-1-150
1h
d4eg2h2
H:151-295
1i
d4eg2b1
B:-1-150
1j
d4eg2b2
B:151-295
1k
d4eg2c1
C:0-150
1l
d4eg2c2
C:151-295
1m
d4eg2d1
D:-1-150
1n
d4eg2d2
D:151-295
1o
d4eg2e1
E:-1-150
1p
d4eg2e2
E:151-295
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asym.Unit (830 KB)
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