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4EG2
Biol. Unit 1
Info
Asym.Unit (830 KB)
Biol.Unit 1 (211 KB)
Biol.Unit 2 (210 KB)
Biol.Unit 3 (207 KB)
Biol.Unit 4 (206 KB)
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(1)
Title
:
2.2 ANGSTROM CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE FROM VIBRIO CHOLERAE IN COMPLEX WITH ZINC AND URIDINE
Authors
:
G. Minasov, Z. Wawrzak, T. Skarina, Y. Wang, S. Grimshaw, L. Papazisi, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
30 Mar 12 (Deposition) - 02 May 12 (Release) - 02 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Cytidine Deaminase, Ump Synthesis, Zn Binding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, Z. Wawrzak, T. Skarina, Y. Wang, S. Grimshaw, L. Papazisi, A. Savchenko, W. F. Anderson
2. 2 Angstrom Crystal Structure Of Cytidine Deaminase From Vibrio Cholerae In Complex With Zinc And Uridine.
To Be Published
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Hetero Components
(3, 26)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
2a: MAGNESIUM ION (MGa)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3aw: SELENOMETHIONINE (MSEaw)
3ax: SELENOMETHIONINE (MSEax)
3ay: SELENOMETHIONINE (MSEay)
3az: SELENOMETHIONINE (MSEaz)
3b: SELENOMETHIONINE (MSEb)
3ba: SELENOMETHIONINE (MSEba)
3bb: SELENOMETHIONINE (MSEbb)
3bc: SELENOMETHIONINE (MSEbc)
3bd: SELENOMETHIONINE (MSEbd)
3be: SELENOMETHIONINE (MSEbe)
3bf: SELENOMETHIONINE (MSEbf)
3bg: SELENOMETHIONINE (MSEbg)
3bh: SELENOMETHIONINE (MSEbh)
3bi: SELENOMETHIONINE (MSEbi)
3bj: SELENOMETHIONINE (MSEbj)
3bk: SELENOMETHIONINE (MSEbk)
3bl: SELENOMETHIONINE (MSEbl)
3bm: SELENOMETHIONINE (MSEbm)
3bn: SELENOMETHIONINE (MSEbn)
3bo: SELENOMETHIONINE (MSEbo)
3bp: SELENOMETHIONINE (MSEbp)
3bq: SELENOMETHIONINE (MSEbq)
3br: SELENOMETHIONINE (MSEbr)
3bs: SELENOMETHIONINE (MSEbs)
3bt: SELENOMETHIONINE (MSEbt)
3bu: SELENOMETHIONINE (MSEbu)
3bv: SELENOMETHIONINE (MSEbv)
3bw: SELENOMETHIONINE (MSEbw)
3bx: SELENOMETHIONINE (MSEbx)
3by: SELENOMETHIONINE (MSEby)
3bz: SELENOMETHIONINE (MSEbz)
3c: SELENOMETHIONINE (MSEc)
3ca: SELENOMETHIONINE (MSEca)
3cb: SELENOMETHIONINE (MSEcb)
3cc: SELENOMETHIONINE (MSEcc)
3cd: SELENOMETHIONINE (MSEcd)
3ce: SELENOMETHIONINE (MSEce)
3cf: SELENOMETHIONINE (MSEcf)
3cg: SELENOMETHIONINE (MSEcg)
3ch: SELENOMETHIONINE (MSEch)
3ci: SELENOMETHIONINE (MSEci)
3cj: SELENOMETHIONINE (MSEcj)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: URIDINE (URIa)
4b: URIDINE (URIb)
4c: URIDINE (URIc)
4d: URIDINE (URId)
4e: URIDINE (URIe)
4f: URIDINE (URIf)
4g: URIDINE (URIg)
4h: URIDINE (URIh)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MSE
22
Mod. Amino Acid
SELENOMETHIONINE
4
URI
2
Ligand/Ion
URIDINE
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:102 , CYS A:129 , CYS A:132 , URI A:302
BINDING SITE FOR RESIDUE ZN A 301
2
AC2
SOFTWARE
PHE A:71 , VAL A:73 , ASN A:89 , GLU A:91 , THR A:100 , VAL A:101 , HIS A:102 , ALA A:103 , GLU A:104 , PRO A:128 , CYS A:129 , ZN A:301 , HOH A:514 , ALA B:232
BINDING SITE FOR RESIDUE URI A 302
3
AC3
SOFTWARE
GLU A:253 , PHE A:255
BINDING SITE FOR RESIDUE ACT A 303
4
AC4
SOFTWARE
HOH B:499 , HOH B:604 , HOH B:605 , HOH E:551 , HOH E:552 , HOH F:559
BINDING SITE FOR RESIDUE MG B 301
5
AC5
SOFTWARE
HIS B:102 , CYS B:129 , CYS B:132 , URI B:303
BINDING SITE FOR RESIDUE ZN B 302
6
AC6
SOFTWARE
ALA A:232 , ALA A:233 , PHE B:71 , VAL B:73 , ASN B:89 , GLU B:91 , THR B:100 , VAL B:101 , HIS B:102 , ALA B:103 , GLU B:104 , PRO B:128 , CYS B:129 , ZN B:302
BINDING SITE FOR RESIDUE URI B 303
7
AC7
SOFTWARE
TYR B:65 , GLU B:253 , PHE B:255
BINDING SITE FOR RESIDUE ACT B 304
8
BC3
SOFTWARE
ARG B:198 , GLN D:40
BINDING SITE FOR RESIDUE ACT D 303
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d4eg2a1 (A:-1-150)
1b: SCOP_d4eg2a2 (A:151-295)
1c: SCOP_d4eg2f1 (F:0-150)
1d: SCOP_d4eg2f2 (F:151-295)
1e: SCOP_d4eg2g1 (G:-1-150)
1f: SCOP_d4eg2g2 (G:151-295)
1g: SCOP_d4eg2h1 (H:-1-150)
1h: SCOP_d4eg2h2 (H:151-295)
1i: SCOP_d4eg2b1 (B:-1-150)
1j: SCOP_d4eg2b2 (B:151-295)
1k: SCOP_d4eg2c1 (C:0-150)
1l: SCOP_d4eg2c2 (C:151-295)
1m: SCOP_d4eg2d1 (D:-1-150)
1n: SCOP_d4eg2d2 (D:151-295)
1o: SCOP_d4eg2e1 (E:-1-150)
1p: SCOP_d4eg2e2 (E:151-295)
View:
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Classes
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(
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Folds
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Families
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Cytidine deaminase-like
(78)
Superfamily
:
Cytidine deaminase-like
(76)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Vibrio cholerae [TaxId: 666]
(1)
1a
d4eg2a1
A:-1-150
1b
d4eg2a2
A:151-295
1c
d4eg2f1
F:0-150
1d
d4eg2f2
F:151-295
1e
d4eg2g1
G:-1-150
1f
d4eg2g2
G:151-295
1g
d4eg2h1
H:-1-150
1h
d4eg2h2
H:151-295
1i
d4eg2b1
B:-1-150
1j
d4eg2b2
B:151-295
1k
d4eg2c1
C:0-150
1l
d4eg2c2
C:151-295
1m
d4eg2d1
D:-1-150
1n
d4eg2d2
D:151-295
1o
d4eg2e1
E:-1-150
1p
d4eg2e2
E:151-295
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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