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(-) Description

Title :  CRYSTAL STRUCTURE OF GLYCEROL KINASE IN COMPLEX WITH GLYCEROL FROM SINORHIZOBIUM MELILOTI 1021
 
Authors :  R. Agarwal, S. Chamala, B. Evans, R. Foti, A. Gizzi, B. Hillerich, A. Kar J. Lafleur, R. Siedel, G. Villigas, W. Zencheck, S. C. Almo, S. Swamina York Structural Genomics Research Consortium (Nysgrc)
Date :  06 Mar 12  (Deposition) - 21 Mar 12  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.33
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Glycerol Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Agarwal, S. C. Almo, S. Swaminathan
Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYCEROL KINASE
    Chains: A, B, C, D
    EC Number: 2.7.1.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GLPK, RB1135, SMB21009
    Organism Common: ENSIFER MELILOTI
    Organism Scientific: SINORHIZOBIUM MELILOTI
    Organism Taxid: 266834
    Strain: 1021

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 41)

Asymmetric Unit (4, 41)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL3Ligand/IonGLYCEROL
3MSE35Mod. Amino AcidSELENOMETHIONINE
4NA2Ligand/IonSODIUM ION
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE17Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 20)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3MSE18Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:105 , GLU A:106 , TRP A:125 , TYR A:157 , ASP A:266 , GLN A:267 , PHE A:291BINDING SITE FOR RESIDUE GOL A 601
2AC2SOFTWAREMSE A:23BINDING SITE FOR RESIDUE NA A 602
3AC3SOFTWAREARG B:105 , GLU B:106 , TRP B:125 , TYR B:157 , ASP B:266 , GLN B:267 , PHE B:291BINDING SITE FOR RESIDUE GOL B 601
4AC4SOFTWAREALA C:488BINDING SITE FOR RESIDUE CL C 601
5AC5SOFTWAREARG C:105 , GLU C:106 , TRP C:125 , TYR C:157 , ASP C:266 , GLN C:267 , PHE C:291BINDING SITE FOR RESIDUE GOL C 602
6AC6SOFTWARESER C:486 , HOH C:704BINDING SITE FOR RESIDUE NA C 603

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1B:200 -B:202
2C:200 -C:202

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu A:13 -Gly A:14
2Ala A:374 -Pro A:375
3Ala B:374 -Pro B:375
4Ala C:374 -Pro C:375
5Gly D:26 -Tyr D:27
6Ala D:374 -Pro D:375

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E1J)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FGGY_KINASES_2PS00445 FGGY family of carbohydrate kinases signature 2.GLPK_RHIME360-380
 
 
 		  4A:383-403
B:383-403
C:383-403
D:383-403
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FGGY_KINASES_2PS00445 FGGY family of carbohydrate kinases signature 2.GLPK_RHIME360-380
 
 
 		  2A:383-403
-
-
D:383-403
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FGGY_KINASES_2PS00445 FGGY family of carbohydrate kinases signature 2.GLPK_RHIME360-380
 
 
 		  2-
B:383-403
C:383-403
-

(-) Exons   (0, 0)

(no "Exon" information available for 4E1J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:498
 aligned with GLPK_RHIME | O86033 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:508
                                        1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
                                     -  |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488        
           GLPK_RHIME     - ------------MGGYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPSLFGAAIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKDWRRNGNDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFAKSWARDRRFEPHMDEATRKVKLKGWRSAVKRTLIA 496
               SCOP domains d4e1ja1 A:12-274 automated matches                                                                                                                                                                                                                                     d4e1ja2 A:275-519 automated matches                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeeee...eeeeeee.....eeeeeeee...........eehhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee....eeeee.........ee......hhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhh..eeeeehhhhhhhhhh.....eeehhhhh....ee....eehhhhhhhhh.hhhhh.eee.........hhhhhh....eeee.hhhhhhhhhh.......eeeee...eeeeee............eeeeeeee..eeeeeeeeee..hhhhhhhhhhh....-----.hhhhhh.......eee.................eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.-----..eeeehhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhh...hhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_2       -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e1j A  12 DLGTENLYFQSmmGGYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEmLPEVKDCAADFGVTDPSLFGAAIPILGVAGDQQAATIGQACFKPGmLKSTYGTGCFALLNTGKDmVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVI-----TGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGmTRNTGPAEFARAALEAVCYQTRDLLEAmHKDWR-----TVLRVDGGmVASDWTmQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFAKSWARDRRFEPHmDEATRKVKLKGWRSAVKRTLIA 519
                                    21 ||     31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   |   241       251       261       271       281       291       301       311       321       331       341  |    351       361       371       381      |391       401       411    |  421     | 431   |   441|      451       461       471       481       491     | 501       511        
                                      23-MSE                                                                                                                                                                                                             235-MSE                                       281-MSE            300-MSE                                     344   350                                   388-MSE                     416-MSE1   427     435-MSE  |                                                    497-MSE                  
                                       24-MSE                                                                                                                                                                                                                                                                                                                                                                                                                           442-MSE                                                                         


Chain B from PDB  Type:PROTEIN  Length:484
 aligned with GLPK_RHIME | O86033 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:494
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492    
           GLPK_RHIME     3 GYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPSLFGAAIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKDWRRNGNDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFAKSWARDRRFEPHMDEATRKVKLKGWRSAVKRTLIA 496
               SCOP domains d4e1jb1 B:26-274 automated matches                                                                                                                                                                                                                       d4e1jb2 B:275-519 automated matches                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...eeeeeee.....eeeeeeee...........eehhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee.....eeee.........ee......hhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhh..eeeehhhhhhhhhhh.....eeehhhhh....ee....eehhhhhhhh..hhhhh.eee...................eeeeeehhhhhhhhh.......eeeee...eeeeeeee..........eeeeeeee..eeeeeeeeee..hhhhhhhhhhh....-----.hhhhhhh......eee.................eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.-----..eeeehhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhh...hhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_2       -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e1j B  26 GYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEmLPEVKDCAADFGVTDPSLFGAAIPILGVAGDQQAATIGQACFKPGmLKSTYGTGCFALLNTGKDmVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVI-----TGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGmTRNTGPAEFARAALEAVCYQTRDLLEAmHKDWR-----TVLRVDGGmVASDWTmQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFAKSWARDRRFEPHmDEATRKVKLKGWRSAVKRTLIA 519
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275     | 285       295    |  305       315       325       335        |-    |  355       365       375       385  |    395       405       415|    |   - |     435      |445       455       465       475       485       495 |     505       515    
                                                                                                                                                                                                                                           235-MSE                                       281-MSE            300-MSE                                     344   350                                   388-MSE                     416-MSE1   427     435-MSE  |                                                    497-MSE                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                          442-MSE                                                                         


Chain C from PDB  Type:PROTEIN  Length:503
 aligned with GLPK_RHIME | O86033 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:513
                                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
                                     -       | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493   
           GLPK_RHIME     - -----------------MGGYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPSLFGAAIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKDWRRNGNDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFAKSWARDRRFEPHMDEATRKVKLKGWRSAVKRTLIA 496
               SCOP domains d4e1jc1 C:7-274 automated matches                                                                                                                                                                                                                                           d4e1jc2 C:275-519 automated matches                                                                                                                                                                                                                   SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee...........eehhhhhhhhhhhhhhhhhh..........eeeeee.....eeee.........ee......hhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhh..eeeehhhhhhhhhhh.....eeehhhhh....ee....eehhhhhhhh..hhhhh.eee...................eeeeeehhhhhhhhh.......eeeee...eeeeee............eeeeeeee..eeeeeeeeee..hhhhhhhhhhh....-----.hhhhhh.......eee.................eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.-----..eeeehhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh....hhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_2       -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e1j C   7 HSSGVDLGTENLYFQSmmGGYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEmLPEVKDCAADFGVTDPSLFGAAIPILGVAGDQQAATIGQACFKPGmLKSTYGTGCFALLNTGKDmVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVI-----TGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGmTRNTGPAEFARAALEAVCYQTRDLLEAmHKDWR-----TVLRVDGGmVASDWTmQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFAKSWARDRRFEPHmDEATRKVKLKGWRSAVKRTLIA 519
                                    16      ||26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276    |  286       296   |   306       316       326       336       | -   |   356       366       376       386 |     396       406       416    |    -|      436     | 446       456       466       476       486       496|      506       516   
                                           23-MSE                                                                                                                                                                                                             235-MSE                                       281-MSE            300-MSE                                     344   350                                   388-MSE                     416-MSE1   427     435-MSE  |                                                    497-MSE                  
                                            24-MSE                                                                                                                                                                                                                                                                                                                                                                                                                           442-MSE                                                                         


Chain D from PDB  Type:PROTEIN  Length:437
 aligned with GLPK_RHIME | O86033 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:494
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492    
           GLPK_RHIME     3 GYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPSLFGAAIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKDWRRNGNDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFAKSWARDRRFEPHMDEATRKVKLKGWRSAVKRTLIA 496
               SCOP domains d4e1jd1 D:26-274 a    utomated matches                                                                                                                                                                                                                   d4e1   jd2 D:275-519 aut omated matches                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeee...----.....eeee.......--..eehhhhhhhhhhhhh......---......eeeeee..................ee......hhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhh.......hhhhhhhhhhh.....eehhhhhhh...ee....eehhhhhhhh..hhhhh.ee...........----.....eeeeee.hhhhhh......---.eeee...eeeeeeee.-........eeeeeeee..eeeeeeeeee...hhhhhhhhhh.....----..hhhhhh......eee.................eee......hhhhhhhhhhhhhhhhhhhhhhhhh...---------.eehhhhhhhhhhhhhhhhhh...ee.---------------------------.......ee.....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FGGY_KINASES_2       -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e1j D  26 GYILAIDQGTTSTRAIVF----KIAGVGQKEFKQHFPK--WVEHDPEEIWQTVVSTVKEAIEK---TANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEmLPEVKDCAADFGVTD----GAAIPILGVAGDQQAATIGQACFK---LKSTYGTGCFALLNTGK-mVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKVIK----TGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGmTRNTGPAEFARAALEAVCYQTRDLLEAmHKDW---------RVDGGmVASDWTmQRLSDLLDAPVDRP---------------------------AKSWARDRRFEPHmDEATRKVKLKGWRSAVKRTLIA 519
                                    35       | -  |     55       | -|       75        85  |   | 95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245    |  255       265       275  |   |285       295  | |  305       315       325       335       345    |  355       365       375       385  |    395       405       415|   |    -    |  435      |445       455|        -         -       485       495 |     505       515    
                                            43   48             63 66                    88  92                                                                                                                                            235-MSE        250  255                    278 282             298 |                                          345  350                                   388-MSE                     416-MSE       430    |      |           456                         484          497-MSE                  
                                                                                                                                                                                                                                                                                                            300-MSE                                                                                                                                435-MSE  |                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                                          442-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E1J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E1J)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GLPK_RHIME | O86033)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004370    glycerol kinase activity    Catalysis of the reaction: ATP + glycerol = sn-glycerol 3-phosphate + ADP + 2 H(+).
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016773    phosphotransferase activity, alcohol group as acceptor    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0019563    glycerol catabolic process    The chemical reactions and pathways resulting in the breakdown of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
    GO:0006071    glycerol metabolic process    The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
    GO:0006072    glycerol-3-phosphate metabolic process    The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

 Visualization

(-) Interactive Views

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