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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GLYCEROL KINASE IN COMPLEX WITH GLYCERO SINORHIZOBIUM MELILOTI 1021
Keywords STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMI RESEARCH CONSORTIUM, NYSGRC, GLYCEROL KINASE, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4E1J     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLYCEROL KINASE  A 498 3680 74
2  Protein   GLYCEROL KINASE  B 484 3614 64
3  Protein   GLYCEROL KINASE  C 503 3697 77
4  Protein   GLYCEROL KINASE  D 437 2956 53
5  Ligand   GLYCEROL KINASE  A 2 0 7
6  Ligand   GLYCEROL KINASE  B 1 0 6
7  Ligand   GLYCEROL KINASE  C 3 0 8
8 Water     97 0 97
total       2025 13947 386

Proteins
Unit 1 ASP12 LEU13 GLY14 THR15 GLU16 ASN17 LEU18 TYR19 PHE20 GLN21 SER22 MSE23 MSE24 GLY25 GLY26 TYR27 ILE28 LEU29 ALA30 ILE31 ASP32 GLN33 GLY34 THR35 THR36 SER37 THR38 ARG39 ALA40 ILE41 VAL42 PHE43 ASP44 GLY45 ASN46 GLN47 LYS48 ILE49 ALA50 GLY51 VAL52 GLY53 GLN54 LYS55 GLU56 PHE57 LYS58 GLN59 HIS60 PHE61 PRO62 LYS63 SER64 GLY65 TRP66 VAL67 GLU68 HIS69 ASP70 PRO71 GLU72 GLU73 ILE74 TRP75 GLN76 THR77 VAL78 VAL79 SER80 THR81 VAL82 LYS83 GLU84 ALA85 ILE86 GLU87 LYS88 SER89 GLY90 ILE91 THR92 ALA93 ASN94 ASP95 ILE96 ALA97 ALA98 ILE99 GLY100 ILE101 THR102 ASN103 GLN104 ARG105 GLU106 THR107 VAL108 VAL109 VAL110 TRP111 ASP112 ARG113 GLU114 THR115 GLY116 LYS117 PRO118 ILE119 HIS120 ASN121 ALA122 ILE123 VAL124 TRP125 GLN126 ASP127 ARG128 ARG129 THR130 ALA131 ALA132 PHE133 CYS134 ASP135 LYS136 LEU137 LYS138 LYS139 LYS140 GLY141 LEU142 GLU143 LYS144 THR145 PHE146 VAL147 LYS148 LYS149 THR150 GLY151 LEU152 LEU153 LEU154 ASP155 PRO156 TYR157 PHE158 SER159 GLY160 THR161 LYS162 LEU163 ASN164 TRP165 LEU166 LEU167 SER168 ASN169 VAL170 LYS171 GLY172 ALA173 GLN174 VAL175 ARG176 ALA177 ALA178 LYS179 GLY180 GLU181 LEU182 CYS183 PHE184 GLY185 THR186 ILE187 ASP188 THR189 PHE190 LEU191 ILE192 TRP193 ARG194 LEU195 THR196 GLY197 GLY198 GLU199 CYS200 PHE201 CYS202 THR203 ASP204 ALA205 THR206 ASN207 ALA208 SER209 ARG210 THR211 LEU212 LEU213 TYR214 ASN215 ILE216 ALA217 GLU218 ASN219 ALA220 TRP221 ASP222 ASP223 GLU224 LEU225 THR226 GLU227 VAL228 LEU229 ARG230 VAL231 PRO232 LYS233 GLU234 MSE235 LEU236 PRO237 GLU238 VAL239 LYS240 ASP241 CYS242 ALA243 ALA244 ASP245 PHE246 GLY247 VAL248 THR249 ASP250 PRO251 SER252 LEU253 PHE254 GLY255 ALA256 ALA257 ILE258 PRO259 ILE260 LEU261 GLY262 VAL263 ALA264 GLY265 ASP266 GLN267 GLN268 ALA269 ALA270 THR271 ILE272 GLY273 GLN274 ALA275 CYS276 PHE277 LYS278 PRO279 GLY280 MSE281 LEU282 LYS283 SER284 THR285 TYR286 GLY287 THR288 GLY289 CYS290 PHE291 ALA292 LEU293 LEU294 ASN295 THR296 GLY297 LYS298 ASP299 MSE300 VAL301 ARG302 SER303 LYS304 ASN305 ARG306 LEU307 LEU308 THR309 THR310 ILE311 ALA312 TYR313 ARG314 LEU315 ASP316 GLY317 GLU318 THR319 THR320 TYR321 ALA322 LEU323 GLU324 GLY325 SER326 ILE327 PHE328 VAL329 ALA330 GLY331 ALA332 ALA333 VAL334 GLN335 TRP336 LEU337 ARG338 ASP339 GLY340 LEU341 LYS342 VAL343 ILE344 THR350 GLY351 SER352 LEU353 ALA354 GLU355 SER356 ALA357 ASP358 PRO359 SER360 GLN361 GLU362 VAL363 TYR364 LEU365 VAL366 PRO367 ALA368 PHE369 THR370 GLY371 LEU372 GLY373 ALA374 PRO375 HIS376 TRP377 ASP378 PRO379 ASP380 ALA381 ARG382 GLY383 ALA384 ILE385 PHE386 GLY387 MSE388 THR389 ARG390 ASN391 THR392 GLY393 PRO394 ALA395 GLU396 PHE397 ALA398 ARG399 ALA400 ALA401 LEU402 GLU403 ALA404 VAL405 CYS406 TYR407 GLN408 THR409 ARG410 ASP411 LEU412 LEU413 GLU414 ALA415 MSE416 HIS417 LYS418 ASP419 TRP420 ARG421 THR427 VAL428 LEU429 ARG430 VAL431 ASP432 GLY433 GLY434 MSE435 VAL436 ALA437 SER438 ASP439 TRP440 THR441 MSE442 GLN443 ARG444 LEU445 SER446 ASP447 LEU448 LEU449 ASP450 ALA451 PRO452 VAL453 ASP454 ARG455 PRO456 VAL457 ILE458 LEU459 GLU460 THR461 THR462 ALA463 LEU464 GLY465 VAL466 ALA467 TRP468 LEU469 ALA470 GLY471 SER472 ARG473 ALA474 GLY475 VAL476 TRP477 PRO478 ASN479 GLN480 GLU481 ALA482 PHE483 ALA484 LYS485 SER486 TRP487 ALA488 ARG489 ASP490 ARG491 ARG492 PHE493 GLU494 PRO495 HIS496 MSE497 ASP498 GLU499 ALA500 THR501 ARG502 LYS503 VAL504 LYS505 LEU506 LYS507 GLY508 TRP509 ARG510 SER511 ALA512 VAL513 LYS514 ARG515 THR516 LEU517 ILE518 ALA519
Unit 2 GLY26 TYR27 ILE28 LEU29 ALA30 ILE31 ASP32 GLN33 GLY34 THR35 THR36 SER37 THR38 ARG39 ALA40 ILE41 VAL42 PHE43 ASP44 GLY45 ASN46 GLN47 LYS48 ILE49 ALA50 GLY51 VAL52 GLY53 GLN54 LYS55 GLU56 PHE57 LYS58 GLN59 HIS60 PHE61 PRO62 LYS63 SER64 GLY65 TRP66 VAL67 GLU68 HIS69 ASP70 PRO71 GLU72 GLU73 ILE74 TRP75 GLN76 THR77 VAL78 VAL79 SER80 THR81 VAL82 LYS83 GLU84 ALA85 ILE86 GLU87 LYS88 SER89 GLY90 ILE91 THR92 ALA93 ASN94 ASP95 ILE96 ALA97 ALA98 ILE99 GLY100 ILE101 THR102 ASN103 GLN104 ARG105 GLU106 THR107 VAL108 VAL109 VAL110 TRP111 ASP112 ARG113 GLU114 THR115 GLY116 LYS117 PRO118 ILE119 HIS120 ASN121 ALA122 ILE123 VAL124 TRP125 GLN126 ASP127 ARG128 ARG129 THR130 ALA131 ALA132 PHE133 CYS134 ASP135 LYS136 LEU137 LYS138 LYS139 LYS140 GLY141 LEU142 GLU143 LYS144 THR145 PHE146 VAL147 LYS148 LYS149 THR150 GLY151 LEU152 LEU153 LEU154 ASP155 PRO156 TYR157 PHE158 SER159 GLY160 THR161 LYS162 LEU163 ASN164 TRP165 LEU166 LEU167 SER168 ASN169 VAL170 LYS171 GLY172 ALA173 GLN174 VAL175 ARG176 ALA177 ALA178 LYS179 GLY180 GLU181 LEU182 CYS183 PHE184 GLY185 THR186 ILE187 ASP188 THR189 PHE190 LEU191 ILE192 TRP193 ARG194 LEU195 THR196 GLY197 GLY198 GLU199 CYS200 PHE201 CYS202 THR203 ASP204 ALA205 THR206 ASN207 ALA208 SER209 ARG210 THR211 LEU212 LEU213 TYR214 ASN215 ILE216 ALA217 GLU218 ASN219 ALA220 TRP221 ASP222 ASP223 GLU224 LEU225 THR226 GLU227 VAL228 LEU229 ARG230 VAL231 PRO232 LYS233 GLU234 MSE235 LEU236 PRO237 GLU238 VAL239 LYS240 ASP241 CYS242 ALA243 ALA244 ASP245 PHE246 GLY247 VAL248 THR249 ASP250 PRO251 SER252 LEU253 PHE254 GLY255 ALA256 ALA257 ILE258 PRO259 ILE260 LEU261 GLY262 VAL263 ALA264 GLY265 ASP266 GLN267 GLN268 ALA269 ALA270 THR271 ILE272 GLY273 GLN274 ALA275 CYS276 PHE277 LYS278 PRO279 GLY280 MSE281 LEU282 LYS283 SER284 THR285 TYR286 GLY287 THR288 GLY289 CYS290 PHE291 ALA292 LEU293 LEU294 ASN295 THR296 GLY297 LYS298 ASP299 MSE300 VAL301 ARG302 SER303 LYS304 ASN305 ARG306 LEU307 LEU308 THR309 THR310 ILE311 ALA312 TYR313 ARG314 LEU315 ASP316 GLY317 GLU318 THR319 THR320 TYR321 ALA322 LEU323 GLU324 GLY325 SER326 ILE327 PHE328 VAL329 ALA330 GLY331 ALA332 ALA333 VAL334 GLN335 TRP336 LEU337 ARG338 ASP339 GLY340 LEU341 LYS342 VAL343 ILE344 THR350 GLY351 SER352 LEU353 ALA354 GLU355 SER356 ALA357 ASP358 PRO359 SER360 GLN361 GLU362 VAL363 TYR364 LEU365 VAL366 PRO367 ALA368 PHE369 THR370 GLY371 LEU372 GLY373 ALA374 PRO375 HIS376 TRP377 ASP378 PRO379 ASP380 ALA381 ARG382 GLY383 ALA384 ILE385 PHE386 GLY387 MSE388 THR389 ARG390 ASN391 THR392 GLY393 PRO394 ALA395 GLU396 PHE397 ALA398 ARG399 ALA400 ALA401 LEU402 GLU403 ALA404 VAL405 CYS406 TYR407 GLN408 THR409 ARG410 ASP411 LEU412 LEU413 GLU414 ALA415 MSE416 HIS417 LYS418 ASP419 TRP420 ARG421 THR427 VAL428 LEU429 ARG430 VAL431 ASP432 GLY433 GLY434 MSE435 VAL436 ALA437 SER438 ASP439 TRP440 THR441 MSE442 GLN443 ARG444 LEU445 SER446 ASP447 LEU448 LEU449 ASP450 ALA451 PRO452 VAL453 ASP454 ARG455 PRO456 VAL457 ILE458 LEU459 GLU460 THR461 THR462 ALA463 LEU464 GLY465 VAL466 ALA467 TRP468 LEU469 ALA470 GLY471 SER472 ARG473 ALA474 GLY475 VAL476 TRP477 PRO478 ASN479 GLN480 GLU481 ALA482 PHE483 ALA484 LYS485 SER486 TRP487 ALA488 ARG489 ASP490 ARG491 ARG492 PHE493 GLU494 PRO495 HIS496 MSE497 ASP498 GLU499 ALA500 THR501 ARG502 LYS503 VAL504 LYS505 LEU506 LYS507 GLY508 TRP509 ARG510 SER511 ALA512 VAL513 LYS514 ARG515 THR516 LEU517 ILE518 ALA519
Unit 3 HIS7 SER8 SER9 GLY10 VAL11 ASP12 LEU13 GLY14 THR15 GLU16 ASN17 LEU18 TYR19 PHE20 GLN21 SER22 MSE23 MSE24 GLY25 GLY26 TYR27 ILE28 LEU29 ALA30 ILE31 ASP32 GLN33 GLY34 THR35 THR36 SER37 THR38 ARG39 ALA40 ILE41 VAL42 PHE43 ASP44 GLY45 ASN46 GLN47 LYS48 ILE49 ALA50 GLY51 VAL52 GLY53 GLN54 LYS55 GLU56 PHE57 LYS58 GLN59 HIS60 PHE61 PRO62 LYS63 SER64 GLY65 TRP66 VAL67 GLU68 HIS69 ASP70 PRO71 GLU72 GLU73 ILE74 TRP75 GLN76 THR77 VAL78 VAL79 SER80 THR81 VAL82 LYS83 GLU84 ALA85 ILE86 GLU87 LYS88 SER89 GLY90 ILE91 THR92 ALA93 ASN94 ASP95 ILE96 ALA97 ALA98 ILE99 GLY100 ILE101 THR102 ASN103 GLN104 ARG105 GLU106 THR107 VAL108 VAL109 VAL110 TRP111 ASP112 ARG113 GLU114 THR115 GLY116 LYS117 PRO118 ILE119 HIS120 ASN121 ALA122 ILE123 VAL124 TRP125 GLN126 ASP127 ARG128 ARG129 THR130 ALA131 ALA132 PHE133 CYS134 ASP135 LYS136 LEU137 LYS138 LYS139 LYS140 GLY141 LEU142 GLU143 LYS144 THR145 PHE146 VAL147 LYS148 LYS149 THR150 GLY151 LEU152 LEU153 LEU154 ASP155 PRO156 TYR157 PHE158 SER159 GLY160 THR161 LYS162 LEU163 ASN164 TRP165 LEU166 LEU167 SER168 ASN169 VAL170 LYS171 GLY172 ALA173 GLN174 VAL175 ARG176 ALA177 ALA178 LYS179 GLY180 GLU181 LEU182 CYS183 PHE184 GLY185 THR186 ILE187 ASP188 THR189 PHE190 LEU191 ILE192 TRP193 ARG194 LEU195 THR196 GLY197 GLY198 GLU199 CYS200 PHE201 CYS202 THR203 ASP204 ALA205 THR206 ASN207 ALA208 SER209 ARG210 THR211 LEU212 LEU213 TYR214 ASN215 ILE216 ALA217 GLU218 ASN219 ALA220 TRP221 ASP222 ASP223 GLU224 LEU225 THR226 GLU227 VAL228 LEU229 ARG230 VAL231 PRO232 LYS233 GLU234 MSE235 LEU236 PRO237 GLU238 VAL239 LYS240 ASP241 CYS242 ALA243 ALA244 ASP245 PHE246 GLY247 VAL248 THR249 ASP250 PRO251 SER252 LEU253 PHE254 GLY255 ALA256 ALA257 ILE258 PRO259 ILE260 LEU261 GLY262 VAL263 ALA264 GLY265 ASP266 GLN267 GLN268 ALA269 ALA270 THR271 ILE272 GLY273 GLN274 ALA275 CYS276 PHE277 LYS278 PRO279 GLY280 MSE281 LEU282 LYS283 SER284 THR285 TYR286 GLY287 THR288 GLY289 CYS290 PHE291 ALA292 LEU293 LEU294 ASN295 THR296 GLY297 LYS298 ASP299 MSE300 VAL301 ARG302 SER303 LYS304 ASN305 ARG306 LEU307 LEU308 THR309 THR310 ILE311 ALA312 TYR313 ARG314 LEU315 ASP316 GLY317 GLU318 THR319 THR320 TYR321 ALA322 LEU323 GLU324 GLY325 SER326 ILE327 PHE328 VAL329 ALA330 GLY331 ALA332 ALA333 VAL334 GLN335 TRP336 LEU337 ARG338 ASP339 GLY340 LEU341 LYS342 VAL343 ILE344 THR350 GLY351 SER352 LEU353 ALA354 GLU355 SER356 ALA357 ASP358 PRO359 SER360 GLN361 GLU362 VAL363 TYR364 LEU365 VAL366 PRO367 ALA368 PHE369 THR370 GLY371 LEU372 GLY373 ALA374 PRO375 HIS376 TRP377 ASP378 PRO379 ASP380 ALA381 ARG382 GLY383 ALA384 ILE385 PHE386 GLY387 MSE388 THR389 ARG390 ASN391 THR392 GLY393 PRO394 ALA395 GLU396 PHE397 ALA398 ARG399 ALA400 ALA401 LEU402 GLU403 ALA404 VAL405 CYS406 TYR407 GLN408 THR409 ARG410 ASP411 LEU412 LEU413 GLU414 ALA415 MSE416 HIS417 LYS418 ASP419 TRP420 ARG421 THR427 VAL428 LEU429 ARG430 VAL431 ASP432 GLY433 GLY434 MSE435 VAL436 ALA437 SER438 ASP439 TRP440 THR441 MSE442 GLN443 ARG444 LEU445 SER446 ASP447 LEU448 LEU449 ASP450 ALA451 PRO452 VAL453 ASP454 ARG455 PRO456 VAL457 ILE458 LEU459 GLU460 THR461 THR462 ALA463 LEU464 GLY465 VAL466 ALA467 TRP468 LEU469 ALA470 GLY471 SER472 ARG473 ALA474 GLY475 VAL476 TRP477 PRO478 ASN479 GLN480 GLU481 ALA482 PHE483 ALA484 LYS485 SER486 TRP487 ALA488 ARG489 ASP490 ARG491 ARG492 PHE493 GLU494 PRO495 HIS496 MSE497 ASP498 GLU499 ALA500 THR501 ARG502 LYS503 VAL504 LYS505 LEU506 LYS507 GLY508 TRP509 ARG510 SER511 ALA512 VAL513 LYS514 ARG515 THR516 LEU517 ILE518 ALA519
Unit 4 GLY26 TYR27 ILE28 LEU29 ALA30 ILE31 ASP32 GLN33 GLY34 THR35 THR36 SER37 THR38 ARG39 ALA40 ILE41 VAL42 PHE43 LYS48 ILE49 ALA50 GLY51 VAL52 GLY53 GLN54 LYS55 GLU56 PHE57 LYS58 GLN59 HIS60 PHE61 PRO62 LYS63 TRP66 VAL67 GLU68 HIS69 ASP70 PRO71 GLU72 GLU73 ILE74 TRP75 GLN76 THR77 VAL78 VAL79 SER80 THR81 VAL82 LYS83 GLU84 ALA85 ILE86 GLU87 LYS88 THR92 ALA93 ASN94 ASP95 ILE96 ALA97 ALA98 ILE99 GLY100 ILE101 THR102 ASN103 GLN104 ARG105 GLU106 THR107 VAL108 VAL109 VAL110 TRP111 ASP112 ARG113 GLU114 THR115 GLY116 LYS117 PRO118 ILE119 HIS120 ASN121 ALA122 ILE123 VAL124 TRP125 GLN126 ASP127 ARG128 ARG129 THR130 ALA131 ALA132 PHE133 CYS134 ASP135 LYS136 LEU137 LYS138 LYS139 LYS140 GLY141 LEU142 GLU143 LYS144 THR145 PHE146 VAL147 LYS148 LYS149 THR150 GLY151 LEU152 LEU153 LEU154 ASP155 PRO156 TYR157 PHE158 SER159 GLY160 THR161 LYS162 LEU163 ASN164 TRP165 LEU166 LEU167 SER168 ASN169 VAL170 LYS171 GLY172 ALA173 GLN174 VAL175 ARG176 ALA177 ALA178 LYS179 GLY180 GLU181 LEU182 CYS183 PHE184 GLY185 THR186 ILE187 ASP188 THR189 PHE190 LEU191 ILE192 TRP193 ARG194 LEU195 THR196 GLY197 GLY198 GLU199 CYS200 PHE201 CYS202 THR203 ASP204 ALA205 THR206 ASN207 ALA208 SER209 ARG210 THR211 LEU212 LEU213 TYR214 ASN215 ILE216 ALA217 GLU218 ASN219 ALA220 TRP221 ASP222 ASP223 GLU224 LEU225 THR226 GLU227 VAL228 LEU229 ARG230 VAL231 PRO232 LYS233 GLU234 MSE235 LEU236 PRO237 GLU238 VAL239 LYS240 ASP241 CYS242 ALA243 ALA244 ASP245 PHE246 GLY247 VAL248 THR249 ASP250 GLY255 ALA256 ALA257 ILE258 PRO259 ILE260 LEU261 GLY262 VAL263 ALA264 GLY265 ASP266 GLN267 GLN268 ALA269 ALA270 THR271 ILE272 GLY273 GLN274 ALA275 CYS276 PHE277 LYS278 LEU282 LYS283 SER284 THR285 TYR286 GLY287 THR288 GLY289 CYS290 PHE291 ALA292 LEU293 LEU294 ASN295 THR296 GLY297 LYS298 MSE300 VAL301 ARG302 SER303 LYS304 ASN305 ARG306 LEU307 LEU308 THR309 THR310 ILE311 ALA312 TYR313 ARG314 LEU315 ASP316 GLY317 GLU318 THR319 THR320 TYR321 ALA322 LEU323 GLU324 GLY325 SER326 ILE327 PHE328 VAL329 ALA330 GLY331 ALA332 ALA333 VAL334 GLN335 TRP336 LEU337 ARG338 ASP339 GLY340 LEU341 LYS342 VAL343 ILE344 LYS345 THR350 GLY351 SER352 LEU353 ALA354 GLU355 SER356 ALA357 ASP358 PRO359 SER360 GLN361 GLU362 VAL363 TYR364 LEU365 VAL366 PRO367 ALA368 PHE369 THR370 GLY371 LEU372 GLY373 ALA374 PRO375 HIS376 TRP377 ASP378 PRO379 ASP380 ALA381 ARG382 GLY383 ALA384 ILE385 PHE386 GLY387 MSE388 THR389 ARG390 ASN391 THR392 GLY393 PRO394 ALA395 GLU396 PHE397 ALA398 ARG399 ALA400 ALA401 LEU402 GLU403 ALA404 VAL405 CYS406 TYR407 GLN408 THR409 ARG410 ASP411 LEU412 LEU413 GLU414 ALA415 MSE416 HIS417 LYS418 ASP419 TRP420 ARG430 VAL431 ASP432 GLY433 GLY434 MSE435 VAL436 ALA437 SER438 ASP439 TRP440 THR441 MSE442 GLN443 ARG444 LEU445 SER446 ASP447 LEU448 LEU449 ASP450 ALA451 PRO452 VAL453 ASP454 ARG455 PRO456 ALA484 LYS485 SER486 TRP487 ALA488 ARG489 ASP490 ARG491 ARG492 PHE493 GLU494 PRO495 HIS496 MSE497 ASP498 GLU499 ALA500 THR501 ARG502 LYS503 VAL504 LYS505 LEU506 LYS507 GLY508 TRP509 ARG510 SER511 ALA512 VAL513 LYS514 ARG515 THR516 LEU517 ILE518 ALA519

Ligands
Unit 5 GOL601 NA602
Unit 6 GOL601
Unit 7 CL601 GOL602 NA603

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany