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4E1J
Biol. Unit 1
Info
Asym.Unit (301 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLYCEROL KINASE IN COMPLEX WITH GLYCEROL FROM SINORHIZOBIUM MELILOTI 1021
Authors
:
R. Agarwal, S. Chamala, B. Evans, R. Foti, A. Gizzi, B. Hillerich, A. Kar J. Lafleur, R. Siedel, G. Villigas, W. Zencheck, S. C. Almo, S. Swamina York Structural Genomics Research Consortium (Nysgrc)
Date
:
06 Mar 12 (Deposition) - 21 Mar 12 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Glycerol Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Agarwal, S. C. Almo, S. Swaminathan
Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021
To Be Published
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
MSE
17
Mod. Amino Acid
SELENOMETHIONINE
4
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:105 , GLU A:106 , TRP A:125 , TYR A:157 , ASP A:266 , GLN A:267 , PHE A:291
BINDING SITE FOR RESIDUE GOL A 601
2
AC2
SOFTWARE
MSE A:23
BINDING SITE FOR RESIDUE NA A 602
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FGGY_KINASES_2 (A:383-403,D:383-403)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FGGY_KINASES_2
PS00445
FGGY family of carbohydrate kinases signature 2.
GLPK_RHIME
360-380
2
A:383-403
-
-
D:383-403
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d4e1ja1 (A:12-274)
1b: SCOP_d4e1ja2 (A:275-519)
1c: SCOP_d4e1jb1 (B:26-274)
1d: SCOP_d4e1jb2 (B:275-519)
1e: SCOP_d4e1jc1 (C:7-274)
1f: SCOP_d4e1jc2 (C:275-519)
1g: SCOP_d4e1jd1 (D:26-274)
1h: SCOP_d4e1jd2 (D:275-519)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Sinorhizobium meliloti [TaxId: 266834]
(1)
1a
d4e1ja1
A:12-274
1b
d4e1ja2
A:275-519
1c
d4e1jb1
B:26-274
1d
d4e1jb2
B:275-519
1e
d4e1jc1
C:7-274
1f
d4e1jc2
C:275-519
1g
d4e1jd1
D:26-274
1h
d4e1jd2
D:275-519
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (301 KB)
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