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(-) Description

Title :  PAMURF IN COMPLEX WITH AMP-PNP AND UDP-MURNAC-TRIPEPTIDE (MDAP)
 
Authors :  K. M. Ruane, V. Majce
Date :  28 Mar 14  (Deposition) - 22 Apr 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym./Biol. Unit :  A
Keywords :  Ligase, Murf, Tripeptide, (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Majce, K. Ruane
Pamurf In Complex With Amp-Pnp And Udp-Murnac-Tripeptide
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D- ALANINE LIGASE
    Atcc: 15692
    Chains: A
    EC Number: 6.3.2.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 7)

Asymmetric/Biological Unit (6, 7)
No.NameCountTypeFull Name
1ALA1Mod. Amino AcidALANINE
2ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3FGA1Ligand/IonGAMMA-D-GLUTAMIC ACID
4MG2Ligand/IonMAGNESIUM ION
5MUB1Ligand/IonN-ACETYLMURAMIC ACID
6UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:114 , ASN A:140 , ANP A:1456 , MG A:1458BINDING SITE FOR RESIDUE MG A1457
2AC2SOFTWARETHR A:114 , ASN A:140 , GLU A:164 , ANP A:1456 , MG A:1457BINDING SITE FOR RESIDUE MG A1458
3AC3SOFTWARETHR A:30 , ASP A:31 , SER A:32 , ARG A:33 , LEU A:44 , GLY A:46 , PRO A:47 , ARG A:48 , PHE A:49 , TYR A:54 , SER A:111 , GLY A:112 , LYS A:113 , THR A:114 , THR A:115 , ASN A:140 , LEU A:141 , ASN A:142 , ASN A:143 , LEU A:145 , GLY A:146 , GLU A:164 , ASN A:189 , THR A:192 , ASP A:218 , HIS A:288 , ASN A:292 , ALA A:349 , MG A:1457 , MG A:1458 , HOH A:2006 , HOH A:2007 , HOH A:2008 , HOH A:2009 , HOH A:2015 , HOH A:2027BINDING SITE FOR LINKED RESIDUES A 1452 TO 1456

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CVM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CVM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CVM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CVM)

(-) Exons   (0, 0)

(no "Exon" information available for 4CVM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:444
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee...hhhhhh.eee....ee.eee.........eeee........hhhhhhhhhhh...eeee..........eee..hhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhh....eee........hhhhhhhh.......eeeee......hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhh....eeeee....hhhhhhhhh....eeeee.......eeeeeeee.....eeeeeee....eeee....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.......eeee.....eeeee....hhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhh....eeeee..hhhhhhhhhh..eeee.hhhhhhhhhh......eeeee.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4cvm A    1 MLEPLRLSQLTVALDARLIGEDAVFSAVSTDSRAIGPGELFIALSGPRFDGHDYLAEVAAKGAVAALVEREVADAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDDSYNANPASMLAAIDILSGFSGRTVLVLGDMGAEQAHREVGAYAAGKVSALYAVGPLMAHAVQAFGATGRHFADQASLIGALATEDPTTTILIKGSRSAAMDKVVAALCA 1454
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    || 203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363     ||378       388       398       408       418       428       438       448  ||
                                                                                                                                                                                                                            195|                                                                                                                                                                       369|                                                                         451|
                                                                                                                                                                                                                             199                                                                                                                                                                        375                                                                         1454
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CVM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CVM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CVM)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HVZ7_PSEAE | Q9HVZ7: 4cvk 4cvl

(-) Related Entries Specified in the PDB File

4cvk PAMURF IN COMPLEX WITH UDP-MURNAC-TRIPEPTIDE (MDAP)
4cvl PAMURF IN COMPLEX WITH AMP-PNP