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(-) Description

Title :  PAMURF IN COMPLEX WITH AMP-PNP
 
Authors :  K. M. Ruane, V. Majce
Date :  28 Mar 14  (Deposition) - 22 Apr 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.98
Chains :  Asym./Biol. Unit :  A
Keywords :  Ligase, Murf, (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Majce, K. Ruane
Pamurf In Complex With Amp-Pnp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
    Atcc: 15692
    Chains: A
    EC Number: 6.3.2.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964
    Synonym: UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D- ALANINE LIGASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:110 , SER A:111 , GLY A:112 , LYS A:113 , THR A:114 , THR A:115 , ASN A:140 , GLU A:164 , ASN A:189 , ASN A:292 , MG A:1453 , MG A:1454BINDING SITE FOR RESIDUE ACP A1452
2AC2SOFTWARETHR A:114 , ASN A:140 , GLU A:164 , ACP A:1452 , MG A:1454BINDING SITE FOR RESIDUE MG A1453
3AC3SOFTWARETHR A:114 , ASN A:140 , ACP A:1452 , MG A:1453BINDING SITE FOR RESIDUE MG A1454

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CVL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CVL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CVL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CVL)

(-) Exons   (0, 0)

(no "Exon" information available for 4CVL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:426
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhh.eee....ee.eee.........eeee...hhhhhhhhhhhh.eeeeee.......eee..hhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhhhhhhhhh.eee........hhhhhhhhh......eeeee......hhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhh....eeeee....hhhhhhhhh....eeeee.......eeeeeeee.....eeeeeee....eeee.....hhhhhhhhhhhhhhhhh..hhhhhhhhhhh........eeee.....eeee..hhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhh....eeeee..hhhhhhhhhh...eee.hhhhhhhhhh......eeeee.hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cvl A   1 MLEPLRLSQLTVALDARLIGEDAVFSAVSTDSRAIGPGELFIALSDGHDYLAEVAAKGAVAALVEREAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDDSPASMLAAIDILSGFSGRTVLVLGDMGAEQAHREVGAYAAGKVSALYAVGPLMAHAVQAFGATGRHFADQASLIGALATEDPTTTILIKGSRSAAMDKVVAALC 451
                                    10        20        30        40    ||  54        64      ||77        87        97       107       117       127       137       147       157       167       177       187  ||   206       216       226       236       246       256       266       276       286       296       306       316       326       336  ||   350       360       375       385       395       405       415       425       435       445      
                                                                       45|                   71|                                                                                                                190|                                                                                                                                        339|                      369|                                                                            
                                                                        50                    75                                                                                                                 200                                                                                                                                         344                       375
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CVL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CVL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CVL)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HVZ7_PSEAE | Q9HVZ7: 4cvk 4cvm

(-) Related Entries Specified in the PDB File

4cvk PAMURF IN COMPLEX WITH UDP-MURNAC-TRIPEPTIDE (MDAP)
4cvm PAMURF IN COMPLEX WITH AMP-PNP AND UDP-MURNAC- TRIPEPTIDE (MDAP)