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(-) Description

Title :  PAMURF IN COMPLEX WITH UDP-MURNAC-TRIPEPTIDE (MDAP)
 
Authors :  K. M. Ruane, V. Majce
Date :  28 Mar 14  (Deposition) - 22 Apr 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.92
Chains :  Asym./Biol. Unit :  A
Keywords :  Ligase, Murf, Tripeptide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Majce, K. Ruane
Pamurf In Complex With Udp-Murnac-Tripeptide (Mdap)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
    Atcc: 15692
    Chains: A
    EC Number: 6.3.2.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric/Biological Unit (5, 5)
No.NameCountTypeFull Name
1ALA1Mod. Amino AcidALANINE
2API1Ligand/Ion2,6-DIAMINOPIMELIC ACID
3FGA1Ligand/IonGAMMA-D-GLUTAMIC ACID
4MUB1Ligand/IonN-ACETYLMURAMIC ACID
5UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:30 , ASP A:31 , SER A:32 , ARG A:33 , LEU A:44 , GLY A:46 , PRO A:47 , ARG A:48 , PHE A:49 , GLY A:51 , TYR A:54 , LYS A:113 , ASN A:140 , LEU A:141 , ASN A:142 , ASN A:143 , GLY A:146 , ALA A:167 , SER A:168 , ARG A:169 , GLU A:172 , HOH A:2009 , HOH A:2010 , HOH A:2031 , HOH A:2084BINDING SITE FOR LINKED RESIDUES A 1452 TO 1456

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CVK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CVK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CVK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CVK)

(-) Exons   (0, 0)

(no "Exon" information available for 4CVK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee...hhhhhh.eee....ee.eee.........eeee........hhhhhhhhhhh...eeee.........eee..hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhhhhh.eee........hhhhhhhhh......eeeee......hhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhh....eeeee....hhhhhhhhh....eeeee.......eeeeeeee.....eeeeeee....eeee....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.......eeee.....eeeee....hhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhh....eeeee..hhhhhhhhhh...eee.hhhhhhhhhh......eeeee.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cvk A    1 MLEPLRLSQLTVALDARLIGEDAVFSAVSTDSRAIGPGELFIALSGPRFDGHDYLAEVAAKGAVAALVEREVAAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDDSYNANPASMLAAIDILSGFSGRTVLVLGDMGAEQAHREVGAYAAGKVSALYAVGPLMAHAVQAFGATGRHFADQASLIGALATEDPTTTILIKGSRSAAMDKVVAALCA 1454
                                    10        20        30        40        50        60        70  ||    81        91       101       111       121       131       141       151       161       171       181       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368||     383       393       403       413       423       433       443       ||
                                                                                                   73|                                                                                                                190|                                                                                                                                                                        369|                                                                         451|
                                                                                                    75                                                                                                                 198                                                                                                                                                                         375                                                                         1454
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CVK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CVK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CVK)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HVZ7_PSEAE | Q9HVZ7: 4cvl 4cvm

(-) Related Entries Specified in the PDB File

4cvl PAMURF IN COMPLEX WITH AMP-PNP
4cvm PAMURF IN COMPLEX WITH AMP-PNP AND UDP-MURNAC- TRIPEPTIDE (MDAP)