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4CEV
Biol. Unit 1
Info
Asym.Unit (288 KB)
Biol.Unit 1 (373 KB)
Biol.Unit 2 (280 KB)
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(1)
Title
:
ARGINASE FROM BACILLUS CALDEVELOX, L-ORNITHINE COMPLEX
Authors
:
M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Date
:
15 Mar 99 (Deposition) - 16 Apr 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D (2x)
Biol. Unit 2: D,E,F (2x)
Keywords
:
Enzyme, Hydrolase, Arginine Hydrolysis, Nitrogen Metabolism, Manganese Metalloenzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Crystal Structures Of Bacillus Caldovelox Arginase In Complex With Substrate And Inhibitors Reveal New Insights Into Activation, Inhibition And Catalysis In The Arginase Superfamily.
Structure Fold. Des. V. 7 435 1999
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: GUANIDINE (GAIa)
1b: GUANIDINE (GAIb)
1c: GUANIDINE (GAIc)
1d: GUANIDINE (GAId)
1e: GUANIDINE (GAIe)
1f: GUANIDINE (GAIf)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
3a: L-ORNITHINE (ORNa)
3b: L-ORNITHINE (ORNb)
3c: L-ORNITHINE (ORNc)
3d: L-ORNITHINE (ORNd)
3e: L-ORNITHINE (ORNe)
3f: L-ORNITHINE (ORNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAI
8
Ligand/Ion
GUANIDINE
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
3
ORN
12
Ligand/Ion
L-ORNITHINE
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC4 (SOFTWARE)
12: BC5 (SOFTWARE)
13: BC6 (SOFTWARE)
14: BC7 (SOFTWARE)
15: BC8 (SOFTWARE)
16: BC9 (SOFTWARE)
17: CC1 (SOFTWARE)
18: CC2 (SOFTWARE)
19: CC3 (SOFTWARE)
20: CC4 (SOFTWARE)
21: CC6 (SOFTWARE)
22: MNA (AUTHOR)
23: MNB (AUTHOR)
24: MNC (AUTHOR)
25: MND (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:99 , ASP A:122 , ASP A:126 , ASP A:226 , MN A:301 , ORN A:401 , HOH A:408
BINDING SITE FOR RESIDUE MN A 300
02
AC2
SOFTWARE
ASP A:122 , HIS A:124 , ASP A:226 , ASP A:228 , MN A:300 , HOH A:408
BINDING SITE FOR RESIDUE MN A 301
03
AC3
SOFTWARE
HOH A:409 , HIS B:99 , ASP B:122 , ASP B:126 , ASP B:226 , MN B:301
BINDING SITE FOR RESIDUE MN B 300
04
AC4
SOFTWARE
HOH A:409 , ASP B:122 , HIS B:124 , ASP B:226 , ASP B:228 , MN B:300
BINDING SITE FOR RESIDUE MN B 301
05
AC5
SOFTWARE
HOH A:410 , HIS C:99 , ASP C:122 , ASP C:126 , ASP C:226 , MN C:301
BINDING SITE FOR RESIDUE MN C 300
06
AC6
SOFTWARE
HOH A:410 , ASP C:122 , HIS C:124 , ASP C:226 , ASP C:228 , MN C:300
BINDING SITE FOR RESIDUE MN C 301
07
AC7
SOFTWARE
ORN A:404 , HOH A:411 , HIS D:99 , ASP D:122 , ASP D:126 , ASP D:226 , MN D:301
BINDING SITE FOR RESIDUE MN D 300
08
AC8
SOFTWARE
HOH A:411 , ASP D:122 , HIS D:124 , ASP D:226 , ASP D:228 , MN D:300
BINDING SITE FOR RESIDUE MN D 301
09
AC9
SOFTWARE
HOH A:412 , HIS E:99 , ASP E:122 , ASP E:126 , ASP E:226 , MN E:301
BINDING SITE FOR RESIDUE MN E 300
10
BC1
SOFTWARE
HOH A:412 , ASP E:122 , HIS E:124 , ASP E:226 , ASP E:228 , MN E:300
BINDING SITE FOR RESIDUE MN E 301
11
BC4
SOFTWARE
ASP A:126 , ASN A:128 , SER A:135 , HIS A:139 , GLY A:140 , ASP A:178 , MN A:300 , HOH A:408 , HOH A:413 , HOH A:417
BINDING SITE FOR RESIDUE ORN A 401
12
BC5
SOFTWARE
HOH A:409 , HOH A:438 , ASP B:126 , ASN B:128 , SER B:135 , HIS B:139 , GLY B:140 , ASP B:178 , GLU B:181 , HOH B:409 , HOH B:412
BINDING SITE FOR RESIDUE ORN A 402
13
BC6
SOFTWARE
HOH A:410 , HOH A:440 , HOH A:441 , HIS C:124 , ASP C:126 , ASN C:128 , SER C:135 , HIS C:139 , ASP C:178 , GLU C:181 , HOH C:411
BINDING SITE FOR RESIDUE ORN A 403
14
BC7
SOFTWARE
HOH A:411 , HOH A:442 , HIS D:124 , ASP D:126 , ASN D:128 , SER D:135 , HIS D:139 , ASP D:178 , GLU D:181 , MN D:300 , HOH D:411 , HOH D:412
BINDING SITE FOR RESIDUE ORN A 404
15
BC8
SOFTWARE
HOH A:412 , HOH A:443 , ASP E:126 , ASN E:128 , SER E:135 , HIS E:139 , GLY E:140 , ASP E:178 , GLU E:181 , HOH E:302 , HOH E:303 , HOH E:305
BINDING SITE FOR RESIDUE ORN A 405
16
BC9
SOFTWARE
HOH A:444 , HIS F:124 , ASP F:126 , ASN F:128 , SER F:135 , HIS F:139 , GLY F:140 , ASP F:178 , GLU F:181 , HOH F:413 , HOH F:414 , HOH F:415 , HOH F:416 , HOH F:418 , HOH F:438
BINDING SITE FOR RESIDUE ORN A 406
17
CC1
SOFTWARE
ARG A:249 , HIS A:252 , GLU A:256 , MET B:195 , HIS B:196 , ASP B:199
BINDING SITE FOR RESIDUE GAI A 407
18
CC2
SOFTWARE
ARG B:249 , HIS B:252 , GLU B:256 , HIS C:196 , ASP C:199
BINDING SITE FOR RESIDUE GAI B 408
19
CC3
SOFTWARE
MET A:195 , ASP A:199 , HIS C:252 , GLU C:256
BINDING SITE FOR RESIDUE GAI C 409
20
CC4
SOFTWARE
HIS D:252 , GLU D:256 , ASP E:199
BINDING SITE FOR RESIDUE GAI D 410
21
CC6
SOFTWARE
MET D:195 , HIS D:196 , ASP D:199 , HIS F:252 , GLU F:256
BINDING SITE FOR RESIDUE GAI F 412
22
MNA
AUTHOR
MN A:300 , MN A:301 , HIS A:99 , ASP A:122 , HIS A:124 , ASP A:126 , ASP A:226 , ASP A:228
SITE COMPRISES TWO MN ATOMS, MN A 300 AND MN A 301 MN A 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, AND A BRIDGING WATER HOH 1. MN A 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH 1
23
MNB
AUTHOR
MN B:300 , MN B:301 , HIS B:99 , ASP B:122 , HIS B:124 , ASP B:126 , ASP B:226 , ASP B:228
SITE COMPRISES TWO MN ATOMS, MN B 300 AND MN B 301 MN B 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, AND A BRIDGING WATER HOH 2. MN B 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH 2
24
MNC
AUTHOR
MN C:300 , MN C:301 , HIS C:99 , ASP C:122 , HIS C:124 , ASP C:126 , ASP C:226 , ASP C:228
SITE COMPRISES TWO MN ATOMS, MN C 300 AND MN C 301 MN C 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, AND A BRIDGING WATER HOH 3. MN C 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH 3
25
MND
AUTHOR
MN D:300 , MN D:301 , HIS D:99 , ASP D:122 , HIS D:124 , ASP D:126 , ASP D:226 , ASP D:228
SITE COMPRISES TWO MN ATOMS, MN D 300 AND MN D 301 MN D 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, AND A BRIDGING WATER HOH 4. MN D 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH 4
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (A:224-245,B:224-245,C:224-245,D:22...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI_BACCD
224-245
8
A:224-245
B:224-245
C:224-245
D:224-245
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4ceva_ (A:)
1b: SCOP_d4cevb_ (B:)
1c: SCOP_d4cevc_ (C:)
1d: SCOP_d4cevd_ (D:)
1e: SCOP_d4ceve_ (E:)
1f: SCOP_d4cevf_ (F:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Bacillus caldovelox [TaxId: 33931]
(5)
1a
d4ceva_
A:
1b
d4cevb_
B:
1c
d4cevc_
C:
1d
d4cevd_
D:
1e
d4ceve_
E:
1f
d4cevf_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_4cevA00 (A:2-299)
1b: CATH_4cevB00 (B:2-299)
1c: CATH_4cevC00 (C:2-299)
1d: CATH_4cevD00 (D:2-299)
1e: CATH_4cevE00 (E:2-299)
1f: CATH_4cevF00 (F:2-299)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Bacillus caldovelox. Organism_taxid: 33931. Strain: bacillus species dsm 411.
(5)
1a
4cevA00
A:2-299
1b
4cevB00
B:2-299
1c
4cevC00
C:2-299
1d
4cevD00
D:2-299
1e
4cevE00
E:2-299
1f
4cevF00
F:2-299
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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