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(-) Description

Title :  ENOYL-ACP REDUCTASE FABI FROM BURKHOLDERIA PSEUDOMALLEI WITH COFACTOR NADH AND INHIBITOR PT155
 
Authors :  M. W. Hirschbeck, N. Liu, C. Neckles, P. J. Tonge, C. Kisker
Date :  29 Apr 13  (Deposition) - 09 Apr 14  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Oxidoreductase, Fatty Acid Biosynthesis, Enoyl- Acp Reductase, Pyridone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Schiebel, A. Chang, S. Shah, Y. Lu, L. Liu, P. Pan, M. W. Hirschbeck, M. Tareilus, S. Eltschkner, W. Yu, J. E. Cummings, S. E. Knudson, G. R. Bommineni, S. G. Walker, R. A. Slayden, C. A. Sotriffer, P. J. Tonge, C. Kisker
Rational Design Of Broad Spectrum Antibacterial Activity Based On A Clinically Relevant Enoyl-Acyl Carrier Protein (Acp) Reductase Inhibitor.
J. Biol. Chem. V. 289 15987 2014
PubMed-ID: 24739388  |  Reference-DOI: 10.1074/JBC.M113.532804

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]
    Chains: A
    EC Number: 1.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET23B
    Expression System Vector Type: PLASMID
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI
    Organism Taxid: 884204
    Strain: BP82
    Synonym: ENOYL-ACP REDUCTASE FABI

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
11S51Ligand/Ion5-(4-AMINO-2-METHYLPHENOXY)-2-HEXYL-4-HYDROXY-1-METHYLPYRIDINIUM
2NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
11S54Ligand/Ion5-(4-AMINO-2-METHYLPHENOXY)-2-HEXYL-4-HYDROXY-1-METHYLPYRIDINIUM
2NAI4Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , LEU A:15 , SER A:19 , ILE A:20 , VAL A:40 , CYS A:63 , ASP A:64 , VAL A:65 , SER A:91 , ILE A:92 , GLY A:93 , LEU A:144 , SER A:145 , LYS A:163 , ALA A:189 , GLY A:190 , PRO A:191 , ILE A:192 , 1S5 A:1260 , HOH A:2038 , HOH A:2039 , HOH A:2044 , HOH A:2053 , HOH A:2101 , HOH A:2198 , HOH A:2338 , HOH A:2339 , HOH A:2340 , HOH A:2341 , HOH A:2342BINDING SITE FOR RESIDUE NAI A 1259
2AC2SOFTWAREGLY A:93 , ALA A:95 , ILE A:100 , PRO A:154 , ASN A:155 , TYR A:156 , PHE A:203 , ILE A:206 , NAI A:1259BINDING SITE FOR RESIDUE 1S5 A 1260

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BKU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4BKU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BKU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BKU)

(-) Exons   (0, 0)

(no "Exon" information available for 4BKU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:257
 aligned with A0A0H3HP34_B | A0A0H3HP34 from UniProtKB/TrEMBL  Length:263

    Alignment length:257
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       
         A0A0H3HP34_B     2 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGM 258
               SCOP domains d4bkua_ A: automated matches                                                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhh....eeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.............hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bku A   2 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGM 258
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BKU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BKU)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4BKU)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H3HP34_B | A0A0H3HP34: 5i7e 5i7f 5i7s 5i7v 5i8w 5i8z 5i9l 5i9m 5i9n 5ifl

(-) Related Entries Specified in the PDB File

4bko ENOYL-ACP REDUCATASE FABV FROM BURKHOLDERIA PSEUDOMALLEI (APO)
4bkq ENOYL-ACP REDUCTASE FROM YERSINIA PESTIS (WILDTYPE)WITH COFACTOR NADH
4bkr ENOYL-ACP REDUCTASE FROM YERSINIA PESTIS (WILDTYPE, REMOVED HISTAG) WITH COFACTOR NADH