5I9M - JenaLib

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Title :   CRYSTAL STRUCTURE OF B. PSEUDOMALLEI FABI IN COMPLEX WITH NAD AND PT408

Authors :   M. W. Hirschbeck, S. Eltschkner, P. J. Tonge, C. Kisker

Date :   20 Feb 16 (Deposition) - 22 Feb 17 (Release) - 19 Apr 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: C  (4x)

Keywords :   Enoyl-Acp Reductase, Burkholderia Pseudomallei, Diphenyl Ethers, Slow-Binding Inhibitors, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Neckles, S. Eltschkner, J. E. Cummings, M. Hirschbeck, F. Daryaee, G. R. Bommineni, Z. Zhang, L. Spagnuolo, W. Yu, S. Davoodi, R. A. Slayden, C. Kisker, P. J. Tonge
Rationalizing The Binding Kinetics For The Inhibition Of Th Burkholderia Pseudomallei Fabi1 Enoyl-Acp Reductase.
Biochemistry V. 56 1865 2017
PubMed-ID: 28225601 | Reference-DOI: 10.1021/ACS.BIOCHEM.6B01048

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]
	Chains	:	A, B, C
	EC Number	:	1.3.1.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	FABI, FABI_2, ACT79_25590, AM256_11615, AM257_11635, AMS56_08605, DP46_2957, DP49_6839, ERS012314_03793, ERS012372_03823, SY87_14645, TR70_1075, VU09_13745
	Organism Scientific	:	BURKHOLDERIA PSEUDOMALLEI
	Organism Taxid	:	28450

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (4x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	69K	3	Ligand/Ion	5-ETHYL-4-FLUORO-2-[(2-METHYLPYRIDIN-3-YL)OXY]PHENOL
2	NAD	3	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	69K	4	Ligand/Ion	5-ETHYL-4-FLUORO-2-[(2-METHYLPYRIDIN-3-YL)OXY]PHENOL
2	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	69K	4	Ligand/Ion	5-ETHYL-4-FLUORO-2-[(2-METHYLPYRIDIN-3-YL)OXY]PHENOL
2	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:13 , LEU A:15 , SER A:19 , ILE A:20 , VAL A:40 , CYS A:63 , ASP A:64 , VAL A:65 , SER A:91 , ILE A:92 , GLY A:93 , ILE A:119 , LEU A:144 , SER A:145 , LYS A:163 , ALA A:189 , GLY A:190 , PRO A:191 , ILE A:192 , THR A:194 , LEU A:195 , ALA A:196 , 69K A:302 , HOH A:426 , HOH A:446 , HOH A:457 , HOH A:465 , HOH A:468 , HOH A:485	binding site for residue NAD A 301
2	AC2	SOFTWARE	GLY A:93 , ILE A:100 , TYR A:156 , LYS A:163 , ALA A:196 , ALA A:197 , PHE A:203 , NAD A:301	binding site for residue 69K A 302
3	AC3	SOFTWARE	GLY B:13 , LEU B:15 , SER B:19 , ILE B:20 , VAL B:40 , CYS B:63 , ASP B:64 , VAL B:65 , SER B:91 , ILE B:92 , GLY B:93 , ILE B:119 , LEU B:144 , SER B:145 , TYR B:146 , LYS B:163 , PRO B:191 , ILE B:192 , THR B:194 , ALA B:196 , 69K B:302 , HOH B:411 , HOH B:413 , HOH B:415 , HOH B:439 , HOH B:446	binding site for residue NAD B 301
4	AC4	SOFTWARE	GLY B:93 , PHE B:94 , ALA B:95 , TYR B:156 , LYS B:163 , ALA B:196 , ALA B:197 , PHE B:203 , NAD B:301	binding site for residue 69K B 302
5	AC5	SOFTWARE	GLY C:13 , LEU C:15 , SER C:19 , ILE C:20 , VAL C:40 , CYS C:63 , ASP C:64 , VAL C:65 , SER C:91 , ILE C:92 , GLY C:93 , ILE C:119 , LEU C:144 , SER C:145 , TYR C:146 , LYS C:163 , ALA C:189 , PRO C:191 , ILE C:192 , THR C:194 , ALA C:196 , 69K C:302 , HOH C:406 , HOH C:417 , HOH C:438 , HOH C:452 , HOH C:476	binding site for residue NAD C 301
6	AC6	SOFTWARE	GLY C:93 , TYR C:146 , TYR C:156 , LYS C:163 , ALA C:196 , ALA C:197 , PHE C:203 , NAD C:301	binding site for residue 69K C 302

(no "SS Bond" information available for 5I9M)

(no "Cis Peptide Bond" information available for 5I9M)

(no "SAP(SNP)/Variant" information available for 5I9M)

(no "PROSITE Motif" information available for 5I9M)

(no "Exon" information available for 5I9M)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh....eeeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i9m A   2 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGM 258
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain B from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh....eeeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i9m B   2 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGM 258
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain C from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh....eeeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i9m C   2 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGM 258
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5I9M)

(no "CATH Domain" information available for 5I9M)

(no "Pfam Domain" information available for 5I9M)

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Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

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