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(-) Description

Title :  ENOYL-ACP REDUCTASE FROM YERSINIA PESTIS (WILDTYPE, REMOVED HISTAG)WITH COFACTOR NADH
 
Authors :  M. W. Hirschbeck, C. Neckles, P. J. Tonge, C. Kisker
Date :  29 Apr 13  (Deposition) - 14 May 14  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Fatty Acid Biosynthesis, Enoyl-Acp Reductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Neckles, A. Pschibul, C. Lai, M. Hirschbeck, J. Kuper, S. Davoodi, J. Zou, N. Liu, P. Pan, S. Shah, F. Daryaee, G. R. Bommineni, C. Lai, C. Simmerling, C. Kisker, P. J. Tonge
Selectivity Of Pyridone- And Diphenyl Ether-Based Inhibitors For The Yersinia Pestis Fabv Enoyl-Acp Reductase
Biochemistry V. 55 2992 2016
PubMed-ID: 27136302  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01301

(-) Compounds

Molecule 1 - PUTATIVE REDUCTASE YPZ3_3519
    Chains: A
    EC Number: 1.3.1.-, 1.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 1035377
    Strain: A1122
    Synonym: ENOYL-ACP REDUCATSE, TRANS-2-ENOYL-COA REDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1DMS1Ligand/IonDIMETHYL SULFOXIDE
2GOL2Ligand/IonGLYCEROL
3NA1Ligand/IonSODIUM ION
4NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:48 , ALA A:49 , SER A:50 , THR A:51 , GLY A:52 , TYR A:53 , PHE A:73 , PHE A:74 , GLU A:75 , GLY A:110 , ASP A:111 , ALA A:112 , SER A:138 , LEU A:139 , ALA A:140 , SER A:141 , PHE A:223 , THR A:224 , TYR A:225 , LYS A:244 , LEU A:271 , LYS A:272 , ALA A:273 , VAL A:274 , THR A:276 , GLN A:277 , ALA A:278 , SER A:279 , GOL A:1402 , DMS A:1403 , NA A:1404 , HOH A:2129 , HOH A:2130 , HOH A:2246 , HOH A:2253 , HOH A:2256 , HOH A:2334BINDING SITE FOR RESIDUE NAI A1400
2AC2SOFTWAREASP A:111 , PHE A:113 , ARG A:143 , ARG A:144 , THR A:145 , HOH A:2503BINDING SITE FOR RESIDUE GOL A1401
3AC3SOFTWAREALA A:140 , SER A:141 , PRO A:142 , NAI A:1400 , HOH A:2149 , HOH A:2253 , HOH A:2256BINDING SITE FOR RESIDUE GOL A1402
4AC4SOFTWARETYR A:235 , ALA A:273 , SER A:279 , ILE A:282 , MET A:285 , NAI A:1400 , HOH A:2334 , HOH A:2370BINDING SITE FOR RESIDUE DMS A1403
5AC5SOFTWAREGLY A:48 , THR A:51 , GLY A:54 , SER A:138 , NAI A:1400BINDING SITE FOR RESIDUE NA A1404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BKR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4BKR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BKR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BKR)

(-) Exons   (0, 0)

(no "Exon" information available for 4BKR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:404
                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........ee..ee...hhhhhhhhhhhhhhhhhhhh.......eeeee...hhhhhhhhhhhhhh...eeeeee...........hhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeee.....eee......eee.........eeeeeee....eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeee...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.............ee.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.....................eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bkr A  -4 SHMLEMIIKPRVRGFICVTAHPTGCEANVKKQIDYVTTEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVSVLKAVVTQASSAIPMMPLYLSLLFKVMKEKGTHEGCIEQVYSLYKDSLCGDSPHMDQEGRLRADYKELDPEVQNQVQQLWDQVTNDNIYQLTDFVGYKSEFLNLFGFGIDGVDYDADVNPDVKIPNLIQG 399
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BKR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BKR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BKR)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  4bkr
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4bko ENOYL-ACP REDUCATASE FABV FROM BURKHOLDERIA PSEUDOMALLEI (APO)
4bkq ENOYL-ACP REDUCTASE FROM YERSINIA PESTIS (WILDTYPE)WITH COFACTOR NADH
4bku ENOYL-ACP REDUCTASE FABI FROM BURKHOLDERIA PSEUDOMALLEI WITH COFACTOR NADH AND INHIBITOR PT155